1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gctagaccaaggcaattctcgcggaaggttttctcagcaaaaaaaaacattgtctgatatgatgattcattctaagttttatgtgttttttcccaatcagGTGACAAGAGAATGTCTCGACAAGGCTATATCGATTTGTTCACCTGGGGTGGAGATCAAACAAATTGGTAGAACTATACAGTATGTAATTTCTGAGTAAC
species | Zea mays |
transcript | GRMZM2G101438_T04 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTACATTTCTTTGCGGTGATGTTGATGACGAAGCTAAGAAATTAGTTAAG GTGACAAGAGAATGTCTCGACAAGGCTATATCGATTTGEST: gi|101399011|gb|EB821378.1|EB821378
genomic: CTACATTTCTTTGCGGTGATGTTGATGACGAAGCTAAGAAATTAGTTAAGgtgattccaa ... tcccaatcagGTGACAAGAGAATGTCTCGACAAGGCTATATCGATTTG
EST: CTACATTTCTTTGCGGTGATGTTGATGACGAAGCTAAGAAATTAGTTAAG GTGACAAGAGAATGTCTCGACAAGGCTATATCGATTTGTTCACCTGGGGTGEST: gi|76912468|gb|DV164746.1|DV164746
genomic: CTACATTTCTTTGCGGTGATGTTGATGACGAAGCTAAGAAATTAGTTAAGgtgattccaa ... tcccaatcagGTGACAAGAGAATGTCTCGACAAGGCTATATCGATTTGTTCACCTGGGGTG
EST: CTACATTTCTTTGCGGTGATGTTGATGACGAAGCTAAGAAATTAGTTAAG GTGACAAGAGAATGTCTCGACAAGGCTATATCGATTTGTTCACCTGGGGTGEST: gi|148995508|gb|EE034697.2|EE034697
genomic: CTACATTTCTTTGCGGTGATGTTGATGACGAAGCTAAGAAATTAGTTAAGgtgattccaa ... tcccaatcagGTGACAAGAGAATGTCTCGACAAGGCTATATCGATTTGTTCACCTGGGGTG
EST: CTACATTTCTTTGCGGTGATGTTGATGACGAAGCTAAGAAATTAGTTAAG GTGACAAGAGAATGTCTCGACAAGGCTATATCGATTTGTTCACCTGGGGTG
genomic: CTACATTTCTTTGCGGTGATGTTGATGACGAAGCTAAGAAATTAGTTAAGgtgattccaa ... tcccaatcagGTGACAAGAGAATGTCTCGACAAGGCTATATCGATTTGTTCACCTGGGGTG
aacattgtctgatatgatgattcattctaagttttatgtgttttttcccaatcagGTGACAAGAGAATGTCTCGACAAGGCTATATCGATTTGTTCACCTGGGGTGGAGATCAAACAAATTGGTAGAACTATACAGTATGTAATTTCTGAGTAAC
gtctgat putative branch site (score: 4)
tgttttttccc putative PPT
ttttatgtgtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctagaccaaggcaattctcgcggaaggttttctcagcaaaaaaaaacattgtctgatatgatgattcattctaagttttatgtgttttttcccaatcagGTGACAAGAGAATGTCTCGACAAGGCTATATCGATTTGTTCACCTGGGGTGGAGATCAAACAAATTGGTAGAACTATACAGTATGTAATTTCTGAGTAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA