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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatgcatattcctcttcccttttgtgcagttttgtatttgtccgtttcaatgcccgggccgaactgtggtgctaatgttttcgttggagcagGAATGGTGAACCAGAAAAGCCACTTGTATTTTATGTTGGACGCTTAGGAGTTGAGAAAAGCTTGGATTTTCTTAAGAG

Basic information

species Zea mays
transcript GRMZM2G100652_T04
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G100652_T03 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os07g01030.1 (Oryza sativa), 3'ss of exon 7
--------------------------------------------------------------gtacatgcatattcctcttcccttttgtgcag----ttttgtatttgtccgtttcaatgcccg---ggccgaactgtggtgctaatgttttcgttggagcagGAATGGTGAACCAGAAAAGCCACTTGTATTTTATGTTGGACGCTTAGGAGTTGAGAAAAGCTTGGATTTTCTTAAGAG
                                                               |||  |    | |||| | | || |||  ||    ||||| | |   |  ||  | | || |     | | |   |  | ||     |||   |  | ||| || |||||||||||||| || ||| || | |||||||| || || ||||||||||||||||| || |||||||||||
gtatgtaatctcctctgtgctcagttgcctttttgcagtacagatgcaatggtgctaaattgctactggttgttgcctcattcattatgtagagaatattttgaaatgagcaattatattccctgtctaacagcatgcttatactttcccttttcctctatcagTAACGGTGAACCAGAAAAACCGCTTATACTGTATGTTGGTCGTTTGGGAGTTGAGAAAAGCTTAGACTTTCTTAAGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71425523|gb|DR806728.1|DR806728
EST:     GAAAGCTTCCATCCTCGTTTCCGCAACATGGAAATGCGTTCAAGGCTAAC                         GAATGGTGAACCAGAAAAGCCACTTGTATTTTATGTTGGACGCTTAGGAGT
genomic: GAAAGCTTCCATCCTCGTTTCCGCAACATGGAAATGCGTTCAAGGCTAACgtacatgcat ... gttggagcagGAATGGTGAACCAGAAAAGCCACTTGTATTTTATGTTGGACGCTTAGGAGT
EST: gi|87156413|gb|DY401202.1|DY401202
EST:     GAAAGCTTCCATCCTCGTTTCCGCAACATGGAAATGCGTTCAAGGCTAAC                         GAATGGTGAACCAGAAAAGCCACTTGTATTTTATGTTGGACGCTTANGAGT
genomic: GAAAGCTTCCATCCTCGTTTCCGCAACATGGAAATGCGTTCAAGGCTAACgtacatgcat ... gttggagcagGAATGGTGAACCAGAAAAGCCACTTGTATTTTATGTTGGACGCTTAGGAGT
EST: gi|211491629|gb|FL429938.1|FL429938
EST:     TCCGCAACATGGAAATGCGTTCAAGGCTAAC                         GAATGGTGAACCAGAAAAGCCACTTGTATTTTATGTTGGACGCTTAGGAGT
genomic: TCCGCAACATGGAAATGCGTTCAAGGCTAACgtacatgcat ... gttggagcagGAATGGTGAACCAGAAAAGCCACTTGTATTTTATGTTGGACGCTTAGGAGT
EST: gi|211368674|gb|FL393824.1|FL393824
EST:     TCCGCAACATGGAAATGCGTTCAAGGCTAAC                         GAATGGTGAACCAGAAAAGCCACTTGTATTTTATGTTGGACGCTTAGGAGT
genomic: TCCGCAACATGGAAATGCGTTCAAGGCTAACgtacatgcat ... gttggagcagGAATGGTGAACCAGAAAAGCCACTTGTATTTTATGTTGGACGCTTAGGAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtccgtttcaatgcccgggccgaactgtggtgctaatgttttcgttggagcagGAATGGTGAACCAGAAAAGCCACTTGTATTTTATGTTGGACGCTTAGGAGTTGAGAAAAGCTTGGATTTTCTTAAGAG
                                tgctaat  putative branch site (score: 2)
                                        ttttcgtt  CT-rich tract
                                   taatgtttt  TA-rich tract