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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttggagacttccctatttatcattgactaattttaacatccatgttttacatttttcatgtaactttccactctcttagGATAAGCATTCCATACCCTTTACAATGGGGTGCACCAACATTCAGTGCAGACCATGCATTTGGTATGATGGCAGCGGTGATGGTTTCTTTAATAGAG

Basic information

species Zea mays
transcript GRMZM2G100484_T03
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G100484_T03 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os09g15170.1 (Oryza sativa), 3'ss of exon 7
gtttggagacttccctatttatcattgactaattttaacatccatgttttacatt----tttcatgt---aactttccactctctt--agGATAAGCATTCCATACCCTTTACAATGGGGTGCACCAACATTCAGTGCAGACCATGCATTTGGTATGATGGCAGCGGTGATGGTTTCTTTAATAGAG
|||||||| || ||  |||      ||| ||||||| |||||||  |||||||      | ||||||   |  ||| |||| |||   |||||||||||||| | ||| || ||||||||||||||||||||||||||| | ||||| |||||||||||||| || ||  |||| || ||||| |||
gtttggagtctgccacattagc---tgattaatttttacatccacattttacaacaaactctcatgttcaatgttttcactgtctcgaagGATAAGCATTCCGTTCCCGTTGCAATGGGGTGCACCAACATTCAGTGCAAATCATGCGTTTGGTATGATGGCTGCCGTCGTGGTGTCGTTAATTGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76283310|gb|DV022878.1|DV022878
EST:     CAGATCAACTGTCGAACAGACCGTGCCAATCTCATATCTTCATCACAATG                         AATA-GCATTCCATACCCTTTACAATGGGGTGCACCAA
genomic: CAGATCAACTGTCGGACAGACCGTGCCAATCTCATATCTTCATCACAATGgtttggagac ... actctcttagGATAAGCATTCCATACCCTTTACAATGGGGTGCACCAA
EST: gi|22545627|gb|BU097986.1|BU097986
EST:     CAGATCAACTGTCGGACAGACCGTGCCAATCTCATATCTTCATCACAATG                         GATAAGCATTCCATACCCTTTACAAATGNGGTGCACCAACATTCAGTGCAG
genomic: CAGATCAACTGTCGGACAGACCGTGCCAATCTCATATCTTCATCACAATGgtttggagac ... actctcttagGATAAGCATTCCATACCCTTTAC-AATGGGGTGCACCAACATTCAGTGCAG
EST: gi|26457048|gb|CA828631.1|CA828631
EST:     CAGATCAACTGTCGGACAGACCGTGCCAATCTCATATCTTCATCACAATG                         GATAAGCATTCCATACCCTTTACAATGGGGTGCACCAACATTCAGTGCAGA
genomic: CAGATCAACTGTCGGACAGACCGTGCCAATCTCATATCTTCATCACAATGgtttggagac ... actctcttagGATAAGCATTCCATACCCTTTACAATGGGGTGCACCAACATTCAGTGCAGA
EST: gi|20811192|gb|BQ295670.1|BQ295670
EST:     CAGATCAACTGTCGGACAGACCGTGCCAATCTCATATCTTCATCACAATG                         GATAAGCATTCCATACCCTTTACAATGGGGTGCACCAACATTCA
genomic: CAGATCAACTGTCGGACAGACCGTGCCAATCTCATATCTTCATCACAATGgtttggagac ... actctcttagGATAAGCATTCCATACCCTTTACAATGGGGTGCACCAACATTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gactaattttaacatccatgttttacatttttcatgtaactttccactctcttagGATAAGCATTCCATACCCTTTACAATGGGGTGCACCAACATTCAGTGCAGACCATGCATTTGGTATGATGGCAGCGGTGATGGTTTCTTTAATAGAG
                                       ctttccactctctt  CT-rich tract
                 atgttttacattttt  TA-rich tract