1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaacagttagtacatttttatccttctcaatccaaaatcctttggtgctcagtcatcgattgtttatcgtgatgtgattcatggcttccatacagcacaacagttatcttttgacaaaaagacaatttttttttactaacgtctggtagattttaattttggaatgccaaacagGTACCATCCTACGAGATGCTTGGCATTCCAAAACATGAGGAAGAAGCGCCTCCCCCTCCACAACCGCAGCGCCCTCTCTCTCCCATGGGTGAAGCCTGTT
species | Zea mays |
transcript | GRMZM2G099598_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACACTAAAAAGCTGGTTTCCGTACTCGAGCCCTTGCAAATAAAATCAGAG GTACCATCCTACGAGATGCTTGGCATTCCAAAACATGAGGAAGAAGCGCCTEST: gi|8383297|gb|BE056240.1|BE056240
genomic: ACACTAAAAAGCTGGTTTCCGTACTCGAGCCCTTGCAAATAAAATCAGAGgtaacagtta ... tgccaaacagGTACCATCCTACGAGATGCTTGGCATTCCAAAACATGAGGAAGAAGCGCCT
EST: ACACAAAAAAGCTGG-TTCCGTACTCGAGCCCTTGCAAATAAAATCAGAG GTACCATCCTACGAGATGCTTGGCATTCCAAAACATGAGGAAGAAGCGCCTEST: gi|71762708|gb|DR960645.1|DR960645
genomic: ACACTAAAAAGCTGGTTTCCGTACTCGAGCCCTTGCAAATAAAATCAGAGgtaacagtta ... tgccaaacagGTACCATCCTACGAGATGCTTGGCATTCCAAAACATGAGGAAGAAGCGCCT
EST: CTTGCAAATAAAATCAGAG GTACCATCCTACGAGATGCTTGGCATTCCAAAACATGAGGAAGAAGCGCCTEST: gi|76016248|gb|DT943418.1|DT943418
genomic: CTTGCAAATAAAATCAGAGgtaacagtta ... tgccaaacagGTACCATCCTACGAGATGCTTGGCATTCCAAAACATGAGGAAGAAGCGCCT
EST: AAAAAGCTGGTTTCCGTACTCGAGCCCTTGCAAATAAAATCAGAG GTACCATCTTACGAGATGCTAGGCATTCCAAAACATGAGGAAGAAGCGCCT
genomic: AAAAAGCTGGTTTCCGTACTCGAGCCCTTGCAAATAAAATCAGAGgtaacagtta ... tgccaaacagGTACCATCCTACGAGATGCTTGGCATTCCAAAACATGAGGAAGAAGCGCCT
agacaatttttttttactaacgtctggtagattttaattttggaatgccaaacagGTACCATCCTACGAGATGCTTGGCATTCCAAAACATGAGGAAGAAGCGCCTCCCCCTCCACAACCGCAGCGCCCTCTCTCTCCCATGGGTGAAGCCTGTT
atttttttttactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacagttagtacatttttatccttctcaatccaaaatcctttggtgctcagtcatcgattgtttatcgtgatgtgattcatggcttccatacagcacaacagttatcttttgacaaaaagacaatttttttttactaacgtctggtagattttaattttggaatgccaaacagGTACCATCCTACGAGATGCTTGGCATTCCAAAACATGAGGAAGAAGCGCCTCCCCCTCCACAACCGCAGCGCCCTCTCTCTCCCATGGGTGAAGCCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC