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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctaaacagtggaacaaacatgaagttgaatgtaacttcattttctagtttttttaagcatccaatgtgtgggaatataatccatggatgcctatttgcagGCTGTTCAGGATGGTGTTGACATTCTCAACCTTTCTGTTGGACCCAATAGCCCACCAACAGCTACAAGGACTACTTTTTTGAATCCTTTTGACGCTGCAC

Basic information

species Zea mays
transcript GRMZM2G099452_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G099452_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os06g48650.3 (Oryza sativa), 3'ss of exon 5
ctaaacagtggaacaa-acatga-agttgaatgtaacttcattttctagtttttttaagcatccaatgtgtgggaatataatccatggatgcctat-------ttgcagGCTGTTCAGGATGGTGTTGACATTCTCAACCTTTCTGTTGGACCCAATAGCCCACCAACAGCTACAAGGACTACTTTTTTGAATCCTTTTGACGCTGCAC
  ||  |||| ||||| |  ||  ||||  |||||| | ||| |      | |   |||| | |||| ||| ||||  |||| |||||||| | ||       ||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||| ||||| |||||  ||||||| ||||||||||||||||| |||||||
--aatgagtgaaacaacatctgccagtt--atgtaa-tgcatgtc---actatcacaagccttcaatatgtaggaac-taatgcatggatggcaatctgcattttgcagGCTGTGCAGGATGGTGTTGACATTCTCAACCTTTCTGTTGGCCCAAATAGCCCGCCAACTGCTACGCGGACTACATTTTTGAATCCTTTTGATGCTGCAC

upper sequence: GRMZM2G099452_T01 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA13G00580.1 (Glycine max), 3'ss of exon 5
ctaaacagtggaacaaacatgaagttga-atgtaacttcattttctagtttttttaagcatccaatgtgtgggaatataatccatgga---tgcctatttgcagGCTGTTCAGGATGGTGTTGACATTCTCAACCTTTCTGTTGGACCCAATAGCCCACCAACAGCTACAAGGACTACTTTTTTGAATCCTTTTGACGCTGCAC
  |   |    || |  ||  || |||  |   ||  ||||||| |   || |    | || | || |       | ||||  |   |   ||  | | | ||||||||  | ||||| || || || |||| |||||| ||||||||||| || || ||| ||||||| | |||||| |||||||| |||||||| ||| |||
-catttaacataaaattcaacaaattgtcacacaatctcatttttttacttct---ggtattctatctaaaattttctaatttacaaaatttgggtgtctacagGCTGTGTATGATGGAGTGGATATACTCAGCCTTTCAGTTGGACCCAACAGTCCTCCAGCAGCTACCAAGACTACGTTTTTGAACCCTTTTGATGCTACAC

upper sequence: GRMZM2G099452_T01 (Zea mays), 3'ss of exon 6
lower sequence: Vv11s0103g00550.t01 (Vitis vinifera), 3'ss of exon 6
-ctaaacagtggaacaaacatgaagttgaatgtaacttcattttctagtttttttaagcatccaatgtgtgggaatataatccatggatgcctatttg--cagGCTGTTCAGGATGGTGTTGACATTCTCAACCTTTCTGTTGGACCCAATAGCCCACCAACAGCTACAAGGACTACTTTTTTGAATCCTTTTGACGCTGCAC
  |   |  || |  || |||    ||   ||  |  |    ||   || || ||     |    | | | |     ||||  | |  | | | | ||  ||||||||||| |||||||| ||||||||||| || ||||| || || ||||| || ||| || | || | ||| || ||||| || |||||||| |||||||
ttttgcccatgaattaagcatctttttaggtgatatct---gttggggtattctttgttttttgttttttcgtttattaattgaagacttcttctgtgaacagGCTGTTCATGATGGTGTGGACATTCTCAATCTCTCTGTGGGGCCAAATAGTCCTCCAGCAACCACCAAGACCACGTTTTTAAACCCTTTTGATGCTGCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtttttttaagcatccaatgtgtgggaatataatccatggatgcctatttgcagGCTGTTCAGGATGGTGTTGACATTCTCAACCTTTCTGTTGGACCCAATAGCCCACCAACAGCTACAAGGACTACTTTTTTGAATCCTTTTGACGCTGCAC
                                            cctattt  CT-rich tract
                           aatataat  TA-rich tract