1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatgatgttttttccttgagcagttggctatttttttccttgagcagttgagctcgttttgatatttcctttttattatcctcagCCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGATGATAGGAGATCGAGGAGTCTTAGCTACAGCAGGAGCCCCATGCGGTCG
species | Zea mays |
transcript | GRMZM2G099317_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGTCCAAGCTATAGCAGGAGCAGGAGTCGTAGCCGGAGCCGGAGCTATAG CCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGAEST: gi|71771420|gb|DR969357.1|DR969357
genomic: AGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAGgtatgatgtt ... ttatcctcagCCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGA
EST: AGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCCGAGCCGGAGCTATAG CCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGAEST: gi|71298910|gb|DR785450.1|DR785450
genomic: AGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAGgtatgatgtt ... ttatcctcagCCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGA
EST: AGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAG CCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGAEST: gi|71310802|gb|DR791706.1|DR791706
genomic: AGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAGgtatgatgtt ... ttatcctcagCCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGA
EST: AGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAG CCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGAEST: gi|50336824|gb|CO531950.1|CO531950
genomic: AGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAGgtatgatgtt ... ttatcctcagCCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGA
EST: AGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAG CCGATCGAGGTEST: gi|76280523|gb|DV020091.1|DV020091
genomic: AGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAGgtatgatgtt ... ttatcctcagCCGATCGAGGT
EST: AGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAG CCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGAEST: gi|60343292|gb|DN210265.1|DN210265
genomic: AGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAGgtatgatgtt ... ttatcctcagCCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGA
EST: CAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAG CCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGAEST: gi|148941832|gb|EC886805.2|EC886805
genomic: CAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAGgtatgatgtt ... ttatcctcagCCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGA
EST: AGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAG CCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGGCCGTGGAC-GTEST: gi|71438958|gb|DR820008.1|DR820008
genomic: AGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAGgtatgatgtt ... ttatcctcagCCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCG-CCGTG-ACCGT
EST: AGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAG CCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGAEST: gi|71298912|gb|DR785451.1|DR785451
genomic: AGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAGgtatgatgtt ... ttatcctcagCCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGA
EST: AGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAG CCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGAEST: gi|148934490|gb|EC878531.2|EC878531
genomic: AGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAGgtatgatgtt ... ttatcctcagCCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGA
EST: AGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAG CCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGAEST: gi|71771421|gb|DR969358.1|DR969358
genomic: AGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAGgtatgatgtt ... ttatcctcagCCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGA
EST: AGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAG CCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGAEST: gi|60351707|gb|DN218680.1|DN218680
genomic: AGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAGgtatgatgtt ... ttatcctcagCCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGA
EST: AGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAG CCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGAEST: gi|211248809|gb|FL007474.1|FL007474
genomic: AGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAGgtatgatgtt ... ttatcctcagCCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGA
EST: AGTCCAAGCTATAGCAGGAGCATGAGTCGTAGCCGGAGCCGGAGCTATAG CCGATCGAGGTCGCTATCTGGATCTCCTAGGGGGAGGCCGCCGTGACCGTGEST: gi|76282712|gb|DV022280.1|DV022280
genomic: AGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAGgtatgatgtt ... ttatcctcagCCGATCGAGGTCCCTATCTGGATCTCCTAGGGG-AGGCCGCCGTGACCGTG
EST: AGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAG CCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGAEST: gi|74232122|gb|DT640036.1|DT640036
genomic: AGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAGgtatgatgtt ... ttatcctcagCCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGA
EST: AGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAG CCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGAEST: gi|31406033|gb|CD484765.1|CD484765
genomic: AGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAGgtatgatgtt ... ttatcctcagCCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGA
EST: GGAGCCGGAGCTATAG CCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGAEST: gi|87153453|gb|DY398242.1|DY398242
genomic: GGAGCCGGAGCTATAGgtatgatgtt ... ttatcctcagCCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGA
EST: AGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAG CCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGEST: gi|149070621|gb|EE159032.2|EE159032
genomic: AGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAGgtatgatgtt ... ttatcctcagCCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAG
EST: AGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAG CCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGAEST: gi|76014888|gb|DT942058.1|DT942058
genomic: AGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAGgtatgatgtt ... ttatcctcagCCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGA
EST: AGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAG CCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGAEST: gi|50333687|gb|CO528813.1|CO528813
genomic: AGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAGgtatgatgtt ... ttatcctcagCCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGA
EST: AGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAG CCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGAEST: gi|76289551|gb|DV029119.1|DV029119
genomic: AGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAGgtatgatgtt ... ttatcctcagCCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGA
EST: AGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAG CCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGAEST: gi|211251031|gb|FL007480.1|FL007480
genomic: AGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAGgtatgatgtt ... ttatcctcagCCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGA
EST: AGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAG CCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGGACCGTGEST: gi|211004444|gb|FL448785.1|FL448785
genomic: AGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAGgtatgatgtt ... ttatcctcagCCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTG-ACCGTG
EST: CCGGAGCTATAG CCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGAEST: gi|23357517|gb|BU645166.1|BU645166
genomic: CCGGAGCTATAGgtatgatgtt ... ttatcctcagCCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGA
EST: AGTCCAAGCTATAGCAGGAGCAGGAGTCGTAGCCGGAGCCGGAGCTATAG CCGATCGAGGTCCCTATCTGGATCTCCTEST: gi|148934137|gb|EC878155.2|EC878155
genomic: AGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAGgtatgatgtt ... ttatcctcagCCGATCGAGGTCCCTATCTGGATCTCCT
EST: AGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAG CCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGAEST: gi|148959184|gb|EE010639.2|EE010639
genomic: AGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAGgtatgatgtt ... ttatcctcagCCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGA
EST: AGTCCAAGCTATACCAGGAGCAGGAGCCGGAGCCGGACCCGGAGCTATAG CCGATCGAGGTCCCTATCTGGGATCTCCTAGGGGA
genomic: AGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAGgtatgatgtt ... ttatcctcagCCGATCGAGGTCCCTATCTGG-ATCTCCTAGGGGA
tttttttccttgagcagttgagctcgttttgatatttcctttttattatcctcagCCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGATGATAGGAGATCGAGGAGTCTTAGCTACAGCAGGAGCCCCATGCGGTCG
ttttgat putative branch site (score: 4)
tatttcctttttatta CT-rich tract
ttttgatatttccttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgatgttttttccttgagcagttggctatttttttccttgagcagttgagctcgttttgatatttcctttttattatcctcagCCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGATGATAGGAGATCGAGGAGTCTTAGCTACAGCAGGAGCCCCATGCGGTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG