1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgtttattgatataaccctatttagctacattctgctgccatatggcacttaatcacattttagctcatcactgaaagcttttactaagcatttgattgataaatatgtttagGCGTGATAAAAGCTATTCACGGTCTCCATCCCCACGTGGTGGACGTGGCCGCAGCCGGAGCTACAGCAGAAGCCGGAGCTATAG
species | Zea mays |
transcript | GRMZM2G099186_T03 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GAATCGGGCCATATAGAGAGAAATTGCCAGAACAGTCCAAGGAATCTCAG GCGTGATAAAAGCTATTCACGGTCTCCATCCCCACGTGGTGGACGTGGCCGEST: gi|6431785|gb|AW171989.1|AW171989
genomic: GAATCGGGCCATATAGAGAGAAATTGCCAGAACAGTCCAAGGAATCTCAGgtgtttattg ... atatgtttagGCGTGATAAAAGCTATTCACGGTCTCCATCCCCACGTGGTGGACGTGGCCG
EST: GAATCGGGCCATATAGAGAGAAATTGCCAGAACAGTCCAAGGAATCTCAG GCGTGAGAAAAGCTATTCACGGTCTCCATCCCCACGTGGTGGACGTGGCCGEST: gi|19057891|gb|BM736558.1|BM736558
genomic: GAATCGGGCCATATAGAGAGAAATTGCCAGAACAGTCCAAGGAATCTCAGgtgtttattg ... atatgtttagGCGTGATAAAAGCTATTCACGGTCTCCATCCCCACGTGGTGGACGTGGCCG
EST: GAATCGGGCCATATAGAGAGAAATTGCCAGAACAGTCCAAGGAATCTCAG GCGTGATAAAAGCTATTCACGGNCTCCATCCCCACGTGGNGGACGTGGCCGEST: gi|71309062|gb|DR790796.1|DR790796
genomic: GAATCGGGCCATATAGAGAGAAATTGCCAGAACAGTCCAAGGAATCTCAGgtgtttattg ... atatgtttagGCGTGATAAAAGCTATTCACGGTCTCCATCCCCACGTGGTGGACGTGGCCG
EST: GAATCGGGCCATATAGAGAGAAAATGCCAGAACAGTCCAAGGAATCTCAG GCGTGATAAAAGCTATTCACGGTCTCCATCCCCACGGTGGTGAACGTGGGCEST: gi|31351638|gb|CD435995.1|CD435995
genomic: GAATCGGGCCATATAGAGAGAAATTGCCAGAACAGTCCAAGGAATCTCAGgtgtttattg ... atatgtttagGCGTGATAAAAGCTATTCACGGTCTCCATCCCCACG-TGGTGGACGTGGCC
EST: GAATCGGGCCATATAGAGAGAAATTGCCAGAACAGTCCAAGGAATCTCAG GCGTGAGAAAAGCTATTCACGGTCTCCATCCCCACGTGGTGGACGTGGCCGEST: gi|71762933|gb|DR960870.1|DR960870
genomic: GAATCGGGCCATATAGAGAGAAATTGCCAGAACAGTCCAAGGAATCTCAGgtgtttattg ... atatgtttagGCGTGATAAAAGCTATTCACGGTCTCCATCCCCACGTGGTGGACGTGGCCG
EST: GAATCGGGCCATATAGAGAGAAATTGCCAGAACAGTCCAAGGAATCTCAG GCGTGATAAAAGCTATTCACGGTCTCCATCCCCACGTGGTGGACGTGGCCG
genomic: GAATCGGGCCATATAGAGAGAAATTGCCAGAACAGTCCAAGGAATCTCAGgtgtttattg ... atatgtttagGCGTGATAAAAGCTATTCACGGTCTCCATCCCCACGTGGTGGACGTGGCCG
ttttagctcatcactgaaagcttttactaagcatttgattgataaatatgtttagGCGTGATAAAAGCTATTCACGGTCTCCATCCCCACGTGGTGGACGTGGCCGCAGCCGGAGCTACAGCAGAAGCCGGAGCTATAG
gattgat putative branch site (score: 4)
atttgattgataaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtttattgatataaccctatttagctacattctgctgccatatggcacttaatcacattttagctcatcactgaaagcttttactaagcatttgattgataaatatgtttagGCGTGATAAAAGCTATTCACGGTCTCCATCCCCACGTGGTGGACGTGGCCGCAGCCGGAGCTACAGCAGAAGCCGGAGCTATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT