1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaaaattactcagtcagaagttgcattttaatgccagttttctttctaaatataacttctattgtaatcaacatacagCTACAATGGCTGAACCCTGACAATAACCACGAGCTATTATGGGATTATAGCATGTGTGCTGACACGAATCGAGGGGCTGCTATCCGAGATTTGATTGCAA
species | Zea mays |
transcript | GRMZM2G098815_T04 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CGCAATGGATTCGGCCCACACCCCCAAGACTTCCTTTATTTGATGGGGAG CTACAATGGCTGAACCCTGANCA-TAACCACGAGCTATTATGGGATTATAGEST: gi|148952745|gb|EC898726.2|EC898726
genomic: CGCAATGGATTCGGCCCACACCCCCAAGACTTCCTTTATTTGATGGGGAGgtaaaattac ... caacatacagCTACAATGGCTGAACCCTGA-CAATAACCACGAGCTATTATGGGATTATAG
EST: CGCAATGGATTCGGCCCACACCCCCAAGACTTCCTTTATTTGATGGGGAG CTACAATGGCTGAACCCTGEST: gi|71438316|gb|DR819366.1|DR819366
genomic: CGCAATGGATTCGGCCCACACCCCCAAGACTTCCTTTATTTGATGGGGAGgtaaaattac ... caacatacagCTACAATGGCTGAACCCTG
EST: CGCAATGGATTCGGCCCACACCCCCAAGACTTCCTTTATTTGATGGGGAG CTACAATGGCTGAEST: gi|74245464|gb|DT653378.1|DT653378
genomic: CGCAATGGATTCGGCCCACACCCCCAAGACTTCCTTTATTTGATGGGGAGgtaaaattac ... caacatacagCTACAATGGCTGA
EST: CGCA-TGGATTCGGCCCACACCCCCAAGACTTCCTTTATTTGATGGGGAG CTACAATGGCTGAACCCTGACAATAACCACGAGCTATTATGGGATTATAGCEST: gi|71433709|gb|DR814759.1|DR814759
genomic: -GCAATGGATTCGGCCCACACCCCCAAGACTTCCTTTATTTGATGGGGAGgtaaaattac ... caacatacagCTACAATGGCTGAACCCTGACAATAACCACGAGCTATTATGGGATTATAGC
EST: CGCAATGGATTCGGCCCACACCCTCAAGACTTCTTTTATTTGATGGGGAG CTACAATGGCTGAACCCTGACAATAAACACGAGCTATTATGGGATTATAGCEST: gi|76926415|gb|DV170849.1|DV170849
genomic: CGCAATGGATTCGGCCCACACCCCCAAGACTTCCTTTATTTGATGGGGAGgtaaaattac ... caacatacagCTACAATGGCTGAACCCTGACAATAACCACGAGCTATTATGGGATTATAGC
EST: CGCAATGGATTCGGCCCAC-CCCCCAAGACTTCCTTTATTTGATGGGGAG CTACAATGGCTGAACCCTGAEST: gi|71765717|gb|DR963654.1|DR963654
genomic: CGCAATGGATTCGGCCCACACCCCCAAGACTTCCTTTATTTGATGGGGAGgtaaaattac ... caacatacagCTACAATGGCTGAACCCTGA
EST: CGCAATGGATTCGGCCCACACCCCCAAGACTTCCTTTATTTGATGGGGAG CTACAATGGCTGAACCCTGACAATAACCACGAGCTATTATGGGATTATAGCEST: gi|91873215|gb|EB403172.1|EB403172
genomic: CGCAATGGATTCGGCCCACACCCCCAAGACTTCCTTTATTTGATGGGGAGgtaaaattac ... caacatacagCTACAATGGCTGAACCCTGACAATAACCACGAGCTATTATGGGATTATAGC
EST: GCAATGGATTCGGCCCACACCCCTCA-GACTTCCTTTATTTGATGGGGAG CTACAATGGCTGAACCCTGACCATATC-ACGAGCTATEST: gi|148960798|gb|EE011460.2|EE011460
genomic: GCAATGGATTCGGCCCACACCCC-CAAGACTTCCTTTATTTGATGGGGAGgtaaaattac ... caacatacagCTACAATGGCTGAACCCTGACAATAACCACGAGCTAT
EST: CGCAATGGATTCGGCCCACACCCCCAAGACTTCCTTTATTTGATGGGGAG CTACAATGGCTGAACCCTG
genomic: CGCAATGGATTCGGCCCACACCCCCAAGACTTCCTTTATTTGATGGGGAGgtaaaattac ... caacatacagCTACAATGGCTGAACCCTG
cattttaatgccagttttctttctaaatataacttctattgtaatcaacatacagCTACAATGGCTGAACCCTGACAATAACCACGAGCTATTATGGGATTATAGCATGTGTGCTGACACGAATCGAGGGGCTGCTATCCGAGATTTGATTGCAA
taaatataacttctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaattactcagtcagaagttgcattttaatgccagttttctttctaaatataacttctattgtaatcaacatacagCTACAATGGCTGAACCCTGACAATAACCACGAGCTATTATGGGATTATAGCATGTGTGCTGACACGAATCGAGGGGCTGCTATCCGAGATTTGATTGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT