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...agtagtttctgtactgatttttccccattaatgtcatccaccaaattcaacattccatatttttgtgaaaaaacctgagtaatctatactgtatcttcagGCTATTGATCATATCATCAATTCAGCTGCCAAGTCAAATTATATGTCAGCTGGTCAGATATCTGTTCCTATTGTTTTTAGAGGACCAAACGGAGCTGCTG
species | Zea mays |
transcript | GRMZM2G097226_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATGGTCTTCGGCCTATTATAGAGTTTATGACATTTAATTTCTCGATGCAG GCTATTGATCATATCATCAATTCAGCTGCCAAGTCAAATTATATGTCAGCTEST: gi|211069303|gb|FL193602.1|FL193602
genomic: ATGGTCTTCGGCCTATTATAGAGTTTATGACATTTAATTTCTCGATGCAGgtcagatttt ... gtatcttcagGCTATTGATCATATCATCAATTCAGCTGCCAAGTCAAATTATATGTCAGCT
EST: ATGGTCTTCGGCCTATTATAGAGTTTATGACATTTAATTTCTCGATGCAG GCTATTGATCATATCATCAATTCAGCTGCCAAGTCAAACTATATGTCAGCTEST: gi|32940983|gb|CF045802.1|CF045802
genomic: ATGGTCTTCGGCCTATTATAGAGTTTATGACATTTAATTTCTCGATGCAGgtcagatttt ... gtatcttcagGCTATTGATCATATCATCAATTCAGCTGCCAAGTCAAATTATATGTCAGCT
EST: ATGGTCTTCGGCCTATTATAGAGTTTATGACATTTAATTTCTCGATGCAG GCTATTGATCATATCATCAATTCAGCTGCCAAGTCAAATTATATGTCAGCTEST: gi|211088145|gb|FL307530.1|FL307530
genomic: ATGGTCTTCGGCCTATTATAGAGTTTATGACATTTAATTTCTCGATGCAGgtcagatttt ... gtatcttcagGCTATTGATCATATCATCAATTCAGCTGCCAAGTCAAATTATATGTCAGCT
EST: ATGGTCTTCGGCCTATTATAGAGTTTATGACATTTAATTTCTCGATGCAG GCTATTGATCATATCATCAATTCAGCTGCCAAGTCAAATTATATGTCAGCTEST: gi|91057168|gb|EB167586.1|EB167586
genomic: ATGGTCTTCGGCCTATTATAGAGTTTATGACATTTAATTTCTCGATGCAGgtcagatttt ... gtatcttcagGCTATTGATCATATCATCAATTCAGCTGCCAAGTCAAATTATATGTCAGCT
EST: ATGGTCTTCGGCCTATTATAGAGTTTATGACATTTAATTTCTCGATGCAG GCTATTGATCATATCATCAATTCAGCTGCCAAGTCAAATTATATGTCAGCT
genomic: ATGGTCTTCGGCCTATTATAGAGTTTATGACATTTAATTTCTCGATGCAGgtcagatttt ... gtatcttcagGCTATTGATCATATCATCAATTCAGCTGCCAAGTCAAATTATATGTCAGCT
ttcaacattccatatttttgtgaaaaaacctgagtaatctatactgtatcttcagGCTATTGATCATATCATCAATTCAGCTGCCAAGTCAAATTATATGTCAGCTGGTCAGATATCTGTTCCTATTGTTTTTAGAGGACCAAACGGAGCTGCTG
tatcttc CT-rich tract
atatttttgtgaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtagtttctgtactgatttttccccattaatgtcatccaccaaattcaacattccatatttttgtgaaaaaacctgagtaatctatactgtatcttcagGCTATTGATCATATCATCAATTCAGCTGCCAAGTCAAATTATATGTCAGCTGGTCAGATATCTGTTCCTATTGTTTTTAGAGGACCAAACGGAGCTGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT