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gtaagcgttcttttctttatttggttcaaatatgttagtatctatgcaaagttaatcatttgtctcaacatgctttccagTGCATTTGAGAAGTCTCTTGGCTTCCGGTTGCAAAAG
species | Zea mays |
transcript | GRMZM2G095778_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTTAGGCTAGTAGTAAGCTACAATGGTCTCAGCATTGGCACAGTTCGAGA TGCATTTGAGAAGTCTCTTGGCTTCCGGTTGCAAAAGEST: gi|37377338|gb|CF625266.1|CF625266
genomic: GTTAGGCTAGTAGTAAGCTACAATGGTCTCAGCATTGGCACAGTTCGAGAgtaagcgttc ... tgctttccagTGCATTTGAGAAGTCTCTTGGCTTCCGGTTGCAAAAG
EST: GTTAGGCTAGTAGTAAGCTACAATGGTCTCAGCATGGGCACAGTTCGAGA TGCA-TTGAGAAAGTCTC-TGGCTTTCCGGTTGCAAAAGEST: gi|211482002|gb|FL392969.1|FL392969
genomic: GTTAGGCTAGTAGTAAGCTACAATGGTCTCAGCATTGGCACAGTTCGAGAgtaagcgttc ... tgctttccagTGCATTTGAG-AAGTCTCTTGGC-TTCCGGTTGCAAAAG
EST: CTCAGCATTGGCACAGTTCGAGA TGCATTTGAGAAGTCTCTTGGCTTCCGGTTGCAAAAGEST: gi|211430121|gb|FL449154.1|FL449154
genomic: CTCAGCATTGGCACAGTTCGAGAgtaagcgttc ... tgctttccagTGCATTTGAGAAGTCTCTTGGCTTCCGGTTGCAAAAG
EST: AATGGTCTCAGCATTGGCACAGTTCGAGA TGCATATGAGAAGTCTCTTGGCTTCCGGTTGCAAAAGEST: gi|89760691|gb|DY689000.1|DY689000
genomic: AATGGTCTCAGCATTGGCACAGTTCGAGAgtaagcgttc ... tgctttccagTGCATTTGAGAAGTCTCTTGGCTTCCGGTTGCAAAAG
EST: ATGGTCTCAGCATTGGCACAGTTTCGAGG TGCATTTGAGAAGTCTCTTGGCTTCCGGTTGCAAAAG
genomic: ATGGTCTCAGCATTGGCACAG-TTCGAGAgtaagcgttc ... tgctttccagTGCATTTGAGAAGTCTCTTGGCTTCCGGTTGCAAAAG
tcaaatatgttagtatctatgcaaagttaatcatttgtctcaacatgctttccagTGCATTTGAGAAGTCTCTTGGCTTCCGGTTGCAAAAG
agttaat putative branch site (score: 43)
tgctttcc putative PPT
aaagttaatcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcgttcttttctttatttggttcaaatatgttagtatctatgcaaagttaatcatttgtctcaacatgctttccagTGCATTTGAGAAGTCTCTTGGCTTCCGGTTGCAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT