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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctgtttgtttttggtctagttttttctggatattttattccacgaaacatgaggcgtgatttctttgagtcctcactgtgtttcctttgtgatcactctgagttgaatttgcctctttggtactcagTCCAGTGGAAGTGAAAGTGGCATCCAGACACAGAAGTGTGCCAAACTAAATACTGGCGACGAGTATGAGAACGGCAGTGACAGCAATCATGATGATGAAG

Basic information

species Zea mays
transcript GRMZM2G095727_T03
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32840867|gb|CD980548.1|CD980548
EST:     AGAATGAGCTTAAGAACCTTTGGCAGCATGTTTGGAGGCGATGCCACAGT                         TCCAGTGGAAGTGAAAGTGGCATCCAGACACAGAAGTGTGCCAAACTAAAT
genomic: AGAATGAGCTTAAGAACCTTTGGCAGCATGTTTGGAGGCGATGCCACAGTgtaagctgtt ... tggtactcagTCCAGTGGAAGTGAAAGTGGCATCCAGACACAGAAGTGTGCCAAACTAAAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcactgtgtttcctttgtgatcactctgagttgaatttgcctctttggtactcagTCCAGTGGAAGTGAAAGTGGCATCCAGACACAGAAGTGTGCCAAACTAAATACTGGCGACGAGTATGAGAACGGCAGTGACAGCAATCATGATGATGAAG
 tcctcac  putative branch site (score: 2)
                                   tttgcctcttt  putative PPT
                              ttgaattt  TA-rich tract