1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
gtgcgccttgacaatattatggagcaagatgttagttgcgactgagtcaagatgtgatcttgttcattcatacttctcactctgaaattgtagATATGGAGTTTAGGTTCTCCAGATCCAAACTTCACACTTGATGGACATCAAAAGGGTGTCAATTGTGTTGACTACTTCACTGGTGGTGACAGGCCCTATT
species | Zea mays |
transcript | GRMZM2G095348_T03 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAAAGGATATTAACACTTTTGCGAGTGCATCTCTTGATCGCACTACAAAG ATATGGAGTTTAGGTTCTCCAGATCCAAACTTCACACTTGATGGACATCAAEST: gi|18654986|gb|BM499791.1|BM499791
genomic: CAAAGGATATTAACACTTTTGCAAGTGCATCTCTTGATCGCACTACAAAGgtgcgccttg ... gaaattgtagATATGGAGTTTAGGTTCTCCAGATCCAAACTTCACACTTGATGGACATCAA
EST: CAAAGGATATTAACACTTTTGCAAGTGCATCTCTTGACCGCACTACAAAG ATATGGAGTTTAGGTTCTCCAGATCCAAACTTCAEST: gi|22489991|gb|BU049914.1|BU049914
genomic: CAAAGGATATTAACACTTTTGCAAGTGCATCTCTTGATCGCACTACAAAGgtgcgccttg ... gaaattgtagATATGGAGTTTAGGTTCTCCAGATCCAAACTTCA
EST: CAAAGGATATTAACACTTTTGCAAGTGCATCTCTTGACCGCACTACAAAG ATATGGAGTTTAGGTTCTCCAGATCCAA-CTTCAC-CTTGAEST: gi|18655044|gb|BM499849.1|BM499849
genomic: CAAAGGATATTAACACTTTTGCAAGTGCATCTCTTGATCGCACTACAAAGgtgcgccttg ... gaaattgtagATATGGAGTTTAGGTTCTCCAGATCCAAACTTCACACTTGA
EST: CAAAGGATATTAACACTTTTGCAAGTGCATCTCTTGACCGCACTACAAAG ATATGGAGTTTAGGTTCTCCAGATCCAAACTTCACACTTGATGGACATCAAEST: gi|18655016|gb|BM499821.1|BM499821
genomic: CAAAGGATATTAACACTTTTGCAAGTGCATCTCTTGATCGCACTACAAAGgtgcgccttg ... gaaattgtagATATGGAGTTTAGGTTCTCCAGATCCAAACTTCACACTTGATGGACATCAA
EST: CAAAGGATATTAACACTTTTGCAAGTGCATCTCTTGACCGCACTACAAAG ATATGGAGTTTAGEST: gi|32930849|gb|CF035661.1|CF035661
genomic: CAAAGGATATTAACACTTTTGCAAGTGCATCTCTTGATCGCACTACAAAGgtgcgccttg ... gaaattgtagATATGGAGTTTAG
EST: CAAAGGATATTAACACTTTTGCAAGTGCATCTCTTGATCGCACTACAAAG ATATGGAGTTTAGGTTCTCCAGATCCAAACTTCACACTTGATGGACATCAAEST: gi|89106409|gb|DY576626.1|DY576626
genomic: CAAAGGATATTAACACTTTTGCAAGTGCATCTCTTGATCGCACTACAAAGgtgcgccttg ... gaaattgtagATATGGAGTTTAGGTTCTCCAGATCCAAACTTCACACTTGATGGACATCAA
EST: CAAAGGATATTAACACTTTTGCAAGTGCATCTCTTGACCGCACTACAAAG ATATGGAGTTTAGGTTCTCCAGATCCAAACTTCACACTTGATGGACATCAAEST: gi|22489999|gb|BU049922.1|BU049922
genomic: CAAAGGATATTAACACTTTTGCAAGTGCATCTCTTGATCGCACTACAAAGgtgcgccttg ... gaaattgtagATATGGAGTTTAGGTTCTCCAGATCCAAACTTCACACTTGATGGACATCAA
EST: CAAAGGATATTAACACTTTTGCAAGTGCATCTCTTGACCGCACTACAAAG ATATGGAGTTTAGGTTCTCCAGATCCAAACTTCAC-CTTGATGGACATCAAEST: gi|18649626|gb|BM498445.1|BM498445
genomic: CAAAGGATATTAACACTTTTGCAAGTGCATCTCTTGATCGCACTACAAAGgtgcgccttg ... gaaattgtagATATGGAGTTTAGGTTCTCCAGATCCAAACTTCACACTTGATGGACATCAA
EST: CAAAGGATATTAACACTTTAGCAAGTGCATCTCTTGACCGCACTACAAAG ATATGGAGTTTAGGTTCTEST: gi|32933566|gb|CF038378.1|CF038378
genomic: CAAAGGATATTAACACTTTTGCAAGTGCATCTCTTGATCGCACTACAAAGgtgcgccttg ... gaaattgtagATATGGAGTTTAGGTTCT
EST: CAAAGGATATTAACACTTTTGCAAGTGCATCTCTTGATCGCACTACAAAG ATATGGAGTTTAGGTTCTCCAGATCCAAACTTCACACTTGATGGACATCAAEST: gi|18661996|gb|BM501688.1|BM501688
genomic: CAAAGGATATTAACACTTTTGCAAGTGCATCTCTTGATCGCACTACAAAGgtgcgccttg ... gaaattgtagATATGGAGTTTAGGTTCTCCAGATCCAAACTTCACACTTGATGGACATCAA
EST: CAAAGGATATTAACACTTTTGCAAGTGCATCTCTTGACCGCACTACAAAG ATATGGAGTTTAGGTTCTCCAGATCCAAACTTCACACTGGATGGACATCAAEST: gi|18450688|gb|BM428966.1|BM428966
genomic: CAAAGGATATTAACACTTTTGCAAGTGCATCTCTTGATCGCACTACAAAGgtgcgccttg ... gaaattgtagATATGGAGTTTAGGTTCTCCAGATCCAAACTTCACACTTGATGGACATCAA
EST: CAAAGGATATTAACACTTTTGCAAGTGCATCTCTTGC-CGCACTACAAAG ATATGGAGTTTAGGTTCTCCAGATCCAAACTTCACACTTGATGGACATCAA
genomic: CAAAGGATATTAACACTTTTGCAAGTGCATCTCTTGATCGCACTACAAAGgtgcgccttg ... gaaattgtagATATGGAGTTTAGGTTCTCCAGATCCAAACTTCACACTTGATGGACATCAA
cgactgagtcaagatgtgatcttgttcattcatacttctcactctgaaattgtagATATGGAGTTTAGGTTCTCCAGATCCAAACTTCACACTTGATGGACATCAAAAGGGTGTCAATTGTGTTGACTACTTCACTGGTGGTGACAGGCCCTATT
ttctcac putative branch site (score: 2)
aaattgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgccttgacaatattatggagcaagatgttagttgcgactgagtcaagatgtgatcttgttcattcatacttctcactctgaaattgtagATATGGAGTTTAGGTTCTCCAGATCCAAACTTCACACTTGATGGACATCAAAAGGGTGTCAATTGTGTTGACTACTTCACTGGTGGTGACAGGCCCTATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG