Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtggaatgtgagtgaatgtaatgatcattcactcatattttccttgtatgcctctttccaatgcagctagcattgtatatatttcagatgtagctggttttgtagatctttttctgatgtagtttgtcccgcagAATTTTTCTTGCGCCAGTTTTGTGATGCTCACACTTGCAGTAAGGGAACAAAACCTTTCCCCAAAGGTGGCAGG

Basic information

species Zea mays
transcript GRMZM2G095323_T03
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G095323_T03 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os12g13130.4 (Oryza sativa), 3'ss of exon 7
gtaagtggaatgtgagtgaatgtaatgatcattcactcatattttccttgtatgcctctttccaatgcagctagcattgtatatatttcagatgtagctggttttgtagatctttttctgatgtagtttgtcccgcagAATTTTTCTTGCGCCAGTTTTGTGATGCTCACACTTGCAGTAAGGGAACAAAACCTTTCCCCAAAGGTGGCAGG
                                                 ||  ||  ||   || | |    | |    ||| | |       | |     |  ||||| | | || || ||  |  ||||  | |||||||| |||||||||| || |||||||| ||||| ||||  || ||  | ||||||||||||||||||||||||
---------------------------------------------gtaagtgagcaactgagcactacttgaatctaattatctgtcctcatagcactc--tcgtgtagctttcttgcttatccaacttgtttcacagAATTTCTCTTGCGCCAATTCTGTGATGCCCACACATGCAAGAATGGCTCTAAACCTTTCCCCAAAGGTGGCAGG

upper sequence: GRMZM2G095323_T03 (Zea mays), 3'ss of exon 6
lower sequence: Vv14s0219g00070.t01 (Vitis vinifera), 3'ss of exon 6
gtaagtggaatgtgagtgaatgtaatgatcattcactcatattttccttgtatgcctctttccaatgcagctagcattgtatatatttcagatgtagctggttttgtagatctttttctgatgtagtttgtcccgcagAATTTTTCTTGCGCCAGTTTTGTGATGCTCACACTTGCAGTAAGGGAACAAAACCTTTCCCCAAAGGTGGCAGG
                                       || | |  || |||   |||||  | | ||   ||||   || || ||     | |   ||| ||   |  |    || |||    |||  |     |||||| ||||||||||| || |||||||| |||||||||| |   ||    || || ||| | | |||  ||| |
--------------------------------------gtagtctt-ttatatatatctttttagt-cactcagcagcata-attttattatttttattggcttacaattttgcattttgacactgttgattt-atagAATTCTTCTTGCGCCAATTCTGTGATGCCCACACTTGCACTGGAGGCCGGAAGCCCTTCTCAAGAGGGCGCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76293362|gb|DV032930.1|DV032930
EST:     AGACAGTTGCTTTCCTATTAATCAAGGTCTTGCTGCCAGCCGTCTTCATG                         AATTTTTCTTGCGCCAGTTTTGTGATGCTCACACTTGCAGTAAGG
genomic: AGACAGTTGCTTTCCTATTAATCAAGGTCTTGCTGCCAGCCGTCTTCATGgtaagtggaa ... tgtcccgcagAATTTTTCTTGCGCCAGTTTTGTGATGCTCACACTTGCAGTAAGG
EST: gi|71310796|gb|DR791700.1|DR791700
EST:     AGACAGTTGCTTTCCTATTAATCAAGGTCTTGCTGCCAGCCGTCTTCATG                         AATTTTTCTTGCGCCAGTTTTGTGATGCTCACACTTGCAGTAAGGGAACAA
genomic: AGACAGTTGCTTTCCTATTAATCAAGGTCTTGCTGCCAGCCGTCTTCATGgtaagtggaa ... tgtcccgcagAATTTTTCTTGCGCCAGTTTTGTGATGCTCACACTTGCAGTAAGGGAACAA
EST: gi|71773093|gb|DR971011.1|DR971011
EST:     AGACAGTTGCTTTCCTATTAATCAAGGTCTTGCTGCCAGCCGTCTTCATG                         AATTTTTCTTGCGCCCGTTTTGTGATGCTCACACTTGCAGTAAGGGAACAA
genomic: AGACAGTTGCTTTCCTATTAATCAAGGTCTTGCTGCCAGCCGTCTTCATGgtaagtggaa ... tgtcccgcagAATTTTTCTTGCGCCAGTTTTGTGATGCTCACACTTGCAGTAAGGGAACAA
EST: gi|74233328|gb|DT641242.1|DT641242
EST:     AGACAGTTGCTTTCCTATTAATCAAGGTCTTGCTGCCAGCCGTCTTCATG                         AATTTTTCTTGCGCCAGTTTTGTGATGCTCACACTTGCAGTAAGGGAACAA
genomic: AGACAGTTGCTTTCCTATTAATCAAGGTCTTGCTGCCAGCCGTCTTCATGgtaagtggaa ... tgtcccgcagAATTTTTCTTGCGCCAGTTTTGTGATGCTCACACTTGCAGTAAGGGAACAA
EST: gi|78116974|gb|DV535361.1|DV535361
EST:     AGACAGTTGCTTTCCTATTAATCAAGGTCTTGCTGCCAGCCGTCTTCATG                         AATTTTTCTTGCGCCAGTTTTGTGATGCTCACACTTGCAGTAAGGGAACAA
genomic: AGACAGTTGCTTTCCTATTAATCAAGGTCTTGCTGCCAGCCGTCTTCATGgtaagtggaa ... tgtcccgcagAATTTTTCTTGCGCCAGTTTTGTGATGCTCACACTTGCAGTAAGGGAACAA
EST: gi|78115630|gb|DV534018.1|DV534018
EST:     AGACAGTTGCTTTCCTATTAATCAAGGTCTTGCTGCCAGCCGTCTTCATG                         AATTTTTCTTGCGCCAG
genomic: AGACAGTTGCTTTCCTATTAATCAAGGTCTTGCTGCCAGCCGTCTTCATGgtaagtggaa ... tgtcccgcagAATTTTTCTTGCGCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttcagatgtagctggttttgtagatctttttctgatgtagtttgtcccgcagAATTTTTCTTGCGCCAGTTTTGTGATGCTCACACTTGCAGTAAGGGAACAAAACCTTTCCCCAAAGGTGGCAGG
                                ttctgat  putative branch site (score: 3)
                                           tttgtccc  putative PPT
                          atcttttt  TA-rich tract