1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aaataaattgggctgtttgttaccatggcagtagacaatatttactacccatgctaagaatctagaacttatgagcatgtgaccctttgggagattgcagGTGAACCGGAAGTACAGAATAGCACCTAGTTCACCCAATTCAGAGCGCCGAAGCCCCAAAATGCCACTGTTGGAAGATGTCCAAAGAGAGCCTGTCAAGA
species | Zea mays |
transcript | GRMZM2G095239_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TACTATCTGCAAAACTGAAGGACTTGTCCACCAGTGGCAAATTGATAAAG GTGAACCGGAAGTACAGAATAGCACCTAGTTCACCCAATTCAGAGCGCCGAEST: gi|60359172|gb|DN226145.1|DN226145
genomic: TACTATCTGCAAAACTGAAGGACTTGTCCACCAGTGGCAAATTGATAAAGgtacgccttg ... gagattgcagGTGAACCGGAAGTACAGAATAGCACCTAGTTCACCCAATTCAGAGCGCCGA
EST: TACTATCTGCAAAACTGAAGGACTTGTCCACCAGTGGCAAATTGATAAAG GTGAACCGGAAGTACAGAATAGCACCTAGTTCACCCAATTCAGAGCGCCGA
genomic: TACTATCTGCAAAACTGAAGGACTTGTCCACCAGTGGCAAATTGATAAAGgtacgccttg ... gagattgcagGTGAACCGGAAGTACAGAATAGCACCTAGTTCACCCAATTCAGAGCGCCGA
tacccatgctaagaatctagaacttatgagcatgtgaccctttgggagattgcagGTGAACCGGAAGTACAGAATAGCACCTAGTTCACCCAATTCAGAGCGCCGAAGCCCCAAAATGCCACTGTTGGAAGATGTCCAAAGAGAGCCTGTCAAGA
taagaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaataaattgggctgtttgttaccatggcagtagacaatatttactacccatgctaagaatctagaacttatgagcatgtgaccctttgggagattgcagGTGAACCGGAAGTACAGAATAGCACCTAGTTCACCCAATTCAGAGCGCCGAAGCCCCAAAATGCCACTGTTGGAAGATGTCCAAAGAGAGCCTGTCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
aaataaa
- - - - - - -tgtttgt
- - - - - - - - - - taccatg
- - - - - - - - - - - - - -gcagtag
- - - - - - - - - - - - - - - - - - - - - - - -cccatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagcatg