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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tactgtaaggtcaacattcatatggagcattgtgtattaatgtatgctttacatgtctaaatatggcttaatcactgcttctgatttttgtaacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAATGGTTCCA

Basic information

species Zea mays
transcript GRMZM2G094497_T02
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G094497_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os06g37180.1 (Oryza sativa), 3'ss of exon 7
------tactgtaaggtcaacattcatatggagcattgtgtattaatgtatgctttacatgtctaaat-atggcttaatcactgcttctgatttttgtaacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAATGGTTCCA
      | |||||  | |||  | | | |  |   || |  ||  |   ||  ||| |||  || ||| |  ||||| |  ||| ||   | ||||  || || ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| || || |
atggtatgctgtagag-caatttacctgttcatttttttccatggagacat-ttttgcatcgctgaatcactgcttatttgctgatt---actttt--aatctccagGGTGGTGAAGATGACAACTTTGCTATCGTGTTTGCTGCTATGGGAGTGAATATGGAAACAGCCCAATTCTTCAAACGTGATTTTGAAGAGAACGGGTCAA

upper sequence: GRMZM2G094497_T01 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA09G38110.2 (Glycine max), 3'ss of exon 7
tactgtaaggtcaacattcatatggagcattgtgtattaatgtatgctttacatgtctaaatatggcttaatcactgcttctgatttttgtaacctgcagGGTGGTG---AAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAATGGTTCCA
 | |   | | | |  ||| | |    ||||   |   | |   | |||||||     |   |     | ||   |   ||  | |||   ||  | |||||||| |   |||| ||||| ||||| || |||||||| ||||||||||| |||||||| || || || || ||||||||||| ||||| |||||||| |   
aattaataaggctattttcttcttattcatttattggaacttgctactttacaccaagatgaagaaagtgatttttcaatcgaactttgtcaatatacagGGTGGAGGAGAAGAGGACAATTTTGCCATCGTGTTTGCAGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTCAAACGTGACTTTGAGGAGAATGGCT---

upper sequence: GRMZM2G094497_T01 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA10G42940.2 (Glycine max), 3'ss of exon 7
tactgtaaggtcaacattcatatggagcattgtgtattaatgtatgctttacatgtctaaatatggcttaatcactgcttctgatttttgtaacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAATGGTTCCA
    |||  |   ||      ||     | | |  |||  |   | || ||| | |   || |||    | | | |  |    | |    |    |||||||||| ||||| ||||| ||||||||||| ||||| ||||||||||| |||||||| || || || || ||||||||||| ||||| |||||||| || |
----gtatagctgactgcttaatcatttact-taaattctttacttctgtactttttgtaagatga--aagtgatttttcaaaaataccatgttatgcagGGTGGAGAAGAGGACAATTTTGCTATTGTATTTGCAGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTCAAACGTGACTTTGAGGAGAATGGATCAA

upper sequence: GRMZM2G094497_T01 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA18G48280.1 (Glycine max), 3'ss of exon 7
tactgtaaggtcaacattcatatggagcattgtgtattaatgtatgctttacatgtctaaatatggcttaatcactgcttctgatttttgtaacctgcagGGTGGTG---AAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAATGGTTCCA
 | |   | | | |  ||| | |    ||||   |   | |   | |||||||     |   |     |  |   | | ||| |||||   ||  | |||||||| |   |||| ||||| ||||| ||||||||||| ||||||||||| |||||||| || || || || ||||||||||| ||||| || ||||| ||  
-attaataagcctattttcttcttattcatttattggaacttgttactttacactaagatgaagaaagtggtttttccatctaattttgtcaatatacaggGTGGAGGAGAAGAGGACAATTTTGCCATTGTGTTTGCAGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTCAAACGTGACTTTGAGGAAAATGGCTC--

upper sequence: GRMZM2G094497_T01 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA20G24070.1 (Glycine max), 3'ss of exon 8
-----tactgtaaggtcaacattcatatggagcattgtgtattaatgtatgctttacatgtctaaatatggcttaatcactgcttctgatttttgtaacc-tgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAATGGTTCCA
     | |  | || |  |  ||    |     || || || |  |  |  || ||| | | ||  | | |    || |  |    |  |       ||  || ||||||| ||||| ||||| ||||||||||||||||| ||||||||||| |||||||| || || || || ||||| ||||| ||||| |||||||| || |
cttatttccttcagatttatttttgctta----atcgtttact--taaactctctacttctgtacttcttgtaagatgaaagtaatttttcacaaatactatgtagGGTGGAGAAGAGGACAATTTTGCTATTGTGTTTGCAGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTCAAGCGTGACTTTGAGGAGAATGGATCAA

upper sequence: GRMZM2G094497_T01 (Zea mays), 3'ss of exon 7
lower sequence: AT4G38510.4 (Arabidopsis thaliana), 3'ss of exon 8
-tactgtaaggtcaacattcatatggagcattgtgtattaatgta-tgctttacatgtctaaatatggcttaatcactgcttctgatttttgt-aacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAATGGTTCCA
 | || | |  |    |    ||    |  ||| ||| |  |||| |||  || |||| | | ||   |   |||||        |||| ||| ||  |||||  |   || ||||| ||||| || |||||||| || || ||||| ||||||||||| || || ||||| || ||||||||||| || |||||||| || |
ctcctttgatttggtaaaatctacaatgagttg-gtagttgtgtaatgccata-atgtatta-taaaacagtatcacattggtccatttatgtgaatttgcagCATCAGGAGGATGATAACTTCGCCATTGTGTTCGCAGCAATGGGTGTGAACATGGAGACTGCACAATTTTTTAAACGTGATTTCGAGGAGAATGGATCGA

upper sequence: GRMZM2G094497_T01 (Zea mays), 3'ss of exon 7
lower sequence: AT1G76030.1 (Arabidopsis thaliana), 3'ss of exon 7
---tactgt-aaggtcaacattcatatg---gagcattgtgtattaatgtatgctttacatgtctaaatatggcttaatcactgcttctgatttttgtaacctgc-agGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAATGGTTCCA
   |  ||| ||  |  |  ||| | |       ||||     | || ||  |||     | ||  |||||     ||  | |  |||| ||| ||||    | | ||| |  || ||| ||||| ||||| ||||||||||| |||||||| ||||||||||| |||||||| |||||||| || ||||||||||| ||||| || |
agttgttgtcaaaattgaatttcttgtttgtagacattcctcttcaacgttggct----gtctcataatat----caaggattctttctcattcttgtgtttttccagGATCATGGAGAGGACAATTTTGCAATTGTGTTTGCAGCTATGGGTGTGAACATGGAGACAGCTCAGTTCTTCAAGCGAGATTTTGAAGAAAATGGATCAA

upper sequence: GRMZM2G094497_T01 (Zea mays), 3'ss of exon 7
lower sequence: AT1G20260.1 (Arabidopsis thaliana), 3'ss of exon 7
tactgtaag---gtcaacattcatatggagcattgtgtattaatgtatgctttacatgtctaaatatggcttaatcactgcttctgatttttgtaacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAATGGTTCCA
||||  |      | || ||| |||| |      || | | |||   | || |  |  | |   |      ||| | |   |  | |  ||       | |||| |  || ||| ||||| ||||| ||||| ||||| |||||||| || |||||||| |||||||| || ||||| |||||||||||||| ||||| || |
tactcaacttctatgaagattgatatagcagtcagtctctcaat---tcctgtgtagttttgtttgctttgtaaactccattattaacattgtgtttttccagGATCATGGAGAGGACAATTTTGCAATTGTTTTTGCAGCTATGGGTGTAAACATGGAGACAGCTCAGTTTTTCAAGCGTGATTTTGAAGAAAATGGATCGA

upper sequence: GRMZM2G094497_T01 (Zea mays), 3'ss of exon 7
lower sequence: Vv18s0001g01020.t01 (Vitis vinifera), 3'ss of exon 7
tactgtaaggtcaacattcatatggagca-ttgtgtatta-atgtatgctttacatgtctaaatatggcttaatcactgcttctgatttttgtaacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAATGGTTCCA
   |  |       | | |   | |  || || ||| ||| || | |  ||||  ||  |||| ||   | | || |   || |     ||| |   |  ||| ||  | ||| ||||| || || || || ||||||||||||||||| |||||||||||||| ||||| || || ||||||||||| || ||||| ||||
ccgttcatttctgtcctaccctttgtccacttctgttttatatttttcttttatctgattaaa-atatgtaattctcatattatttgccttg-agtttatagGATGAGGTAGAGGACAATTTCGCCATCGTCTTTGCTGCTATGGGAGTAAACATGGAAACAGCACAATTTTTTAAGCGTGATTTTGAGGAAAATGGATCCA

upper sequence: GRMZM2G094497_T01 (Zea mays), 3'ss of exon 7
lower sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 7
tactgtaaggtcaacattcatatggagcattgtgtattaatgtatgcttta-catgtctaaatatggcttaatcactgcttctgatttttgtaacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAATGGTTCCA
   ||| |  | | |||| || |      |  | ||||    |    |||| ||  | | ||  ||   | |    |  || |  |  || |||| |||||| ||  ||||| ||||||||||| ||||| ||||| ||||||||||| |||||||| || || || || || ||||||||||| || || ||||| || |
-gatgttaaatgaccatttatttcctttttattttattttctttctttttatcaattttgaacttgctatgagatatcatttttctacttttaacttgcagGATGTGGAAGAGGACAACTTTGCCATTGTTTTTGCAGCTATGGGAGTAAACATGGAGACTGCACAGTTTTTTAAACGTGATTTCGAGGAAAATGGATCAA

upper sequence: GRMZM2G094497_T01 (Zea mays), 3'ss of exon 7
lower sequence: PP1S100_117V6.1 (Physcomitrella patens), 3'ss of exon 7
---tactgtaaggtcaac-attcatatggagcattgtgtattaatgtatgctttacatgtctaaatatggcttaatcactgcttctgatttttgtaacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAATGGTTCCA
    |   |  | ||    |||  | |||   ||    | |  ||    |    |     || | ||  | | ||    || |   |  ||   |   | | | |     |  || ||||| ||   |||||| ||||| ||||||||||| |||||||| ||||||   ||||||||||||||||| || || || || |   
cctaagcatttgttcttttattggtttggttgataccttttctataagcgtggaaggctcctgagtaatgataaaatg-tgttggcgtgttccttcgacagGATGAACACGGCGAAGACAATTTCTGTATTGTTTTTGCAGCTATGGGAGTTAACATGGAGACAGCTACCTTCTTCAAACGTGATTTCGAGGAAAACGGGT---

upper sequence: GRMZM2G094497_T01 (Zea mays), 3'ss of exon 7
lower sequence: PP1S425_12V6.1 (Physcomitrella patens), 3'ss of exon 6
tactgtaaggtcaacattcatatggagcattgtgtattaatgtatgctttacatgtctaaatatggcttaatcactgcttctgatttttgtaacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAATGGTTCCA-----------------------------
                                                                                                   |   ||||||   |||||||||  ||| || || |||||||||||||| |||||||| ||||||   ||||||||||||||||| ||||| ||||| || |                             
---------------------------------------------------------------------------------------------------gcccggtgaa---gacaacttttgtatcgttttcgctgctatgggagTTAACATGGAGACAGCTACTTTCTTCAAACGTGATTTCGAAGAAAATGGATCTATGGAGAGAGTGACACTTTTTCTCAACTTG

upper sequence: GRMZM2G094497_T01 (Zea mays), 3'ss of exon 7
lower sequence: EFJ11911 (Selaginella moellendorffii), 3'ss of exon 6
tactgtaaggtcaacattcatatggagcattgtgtattaatgtatgctttacatgt-ctaaatatggcttaatcactgcttctgatttttgtaacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAATGGTTCCA
                                 |||  | ||| | |  |  || | ||   | | | | |   |||| |     ||| | |    | ||| ||| ||  || ||||||||||| || || ||||| |||||||| ||||||||||| || || || || |||||| | |||||||| || ||||| || |
---------------------------------gtacaattgttttccgtttatcttctgtctgttgttgag--actgat--gagtttctttcgtatccagCGTGATGTTGAAGACAACTTTGCAATCGTCTTTGCAGCTATGGGTGTGAACATGGAGACTGCACAGTTTTTCAAAAGGGATTTTGAGGAAAATGGATCGA

upper sequence: GRMZM2G094497_T01 (Zea mays), 3'ss of exon 7
lower sequence: EFJ13375 (Selaginella moellendorffii), 3'ss of exon 6
tactgtaaggtcaacattcatatggagcattgtgtattaatgtatgctttacatgt-ctaaatatggcttaatcactgcttctgatttttgtaacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAATGGTTCCA
                                 ||| |  ||| | |  |  || | ||   | | | | |   |||| |     ||| | |    | ||| ||| ||  || ||||||||||| || || ||||| |||||||| ||||||||||| || || || || |||||| | |||||||| || ||||| || |
---------------------------------gtacttttgttttccgtttatcttctgtctgttgttgag--actgat--gagtttctttcgtatccagCGTGATGTTGAAGACAACTTTGCAATCGTCTTTGCAGCTATGGGTGTGAACATGGAGACTGCACAGTTTTTCAAAAGAGATTTTGAGGAAAATGGATCGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4681248|gb|AI629918.1|AI629918
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|32829975|gb|CD969653.1|CD969653
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|32831681|gb|CD971359.1|CD971359
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|32910787|gb|CF015599.1|CF015599
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|13125954|gb|BG316629.1|BG316629
EST:     TGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: TGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|33101985|gb|CF061945.1|CF061945
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|32928560|gb|CF033372.1|CF033372
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|32929168|gb|CF033980.1|CF033980
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|31351754|gb|CD436111.1|CD436111
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|33094782|gb|CF054776.1|CF054776
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|33102163|gb|CF062123.1|CF062123
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|67020067|gb|CO448816.1|CO448816
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|32838409|gb|CD978087.1|CD978087
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|32850751|gb|CD990432.1|CD990432
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|194716810|gb|FK933969.1|FK933969
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|32850726|gb|CD990407.1|CD990407
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|13490658|gb|BG517422.1|BG517422
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|33101471|gb|CF061431.1|CF061431
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|33102084|gb|CF062044.1|CF062044
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|13125942|gb|BG316617.1|BG316617
EST:     TGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: TGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|211474175|gb|FL062083.1|FL062083
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|32831612|gb|CD971290.1|CD971290
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|33102277|gb|CF062237.1|CF062237
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|13125963|gb|BG316638.1|BG316638
EST:     ATTGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGCTGAA
genomic: ATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAG-TGAA
EST: gi|13125933|gb|BG316608.1|BG316608
EST:     GACATTGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|31351755|gb|CD436112.1|CD436112
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctttacatgtctaaatatggcttaatcactgcttctgatttttgtaacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAATGGTTCCA
                                          ttgtaac  putative branch site (score: 2)
                                       tttttgt  CT-rich tract
                                      atttttgtaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tactgtaaggtcaacattcatatggagcattgtgtattaatgtatgctttacatgtctaaatatggcttaatcactgcttctgatttttgtaacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAATGGTTCCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA