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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatttcgttagtggccatgtcagctatcatgatagttgctaaaggtttcttctccaattctgtatgtcattagttctgatgttggatgtttcttttgcagGTTTAGGCTGGAGTTTTCCATGTGATATTTGGAGTGTTGGCTGTATTCTTGTTGAGCTATGCTCTGTTAGATCTCTTCACACACTTTATTTTTCTAGTAC

Basic information

species Zea mays
transcript GRMZM2G094039_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G094039_T01 (Zea mays), 3'ss of exon 6
lower sequence: Vv04s0008g04220.t01 (Vitis vinifera), 3'ss of exon 8
tatttcgttagtggccatgtcagctatcatgatagttgctaaaggtttcttctccaat--tctgtatgtcattagttctgatgttggatgtttcttttgcagGTTTAGGCTGGAGTTTTCCATGTGATATTTGGAGTGTTGGCTGTATTCTTGTTGAGCTATGCTCTGTTAGATCTCTTCACACACTTTATTTTTCTAGTAC
      |||   |  ||| | |  |    ||    ||   |  |      | |  | |  | |   | |   |  | |  ||  |  |||  | | |||||||||| || ||||||| |||||||||| | ||||||||||| || || || || || || || | ||                                  
--gcgtgttgaagcacattttaaatcctgtgtggcttatcagtgccccggtttttagtgatttccttttttctcatccacattataaatgcatttattgcagGTTTGGGATGGAGTTATCCATGTGATTTATGGAGTGTTGGTTGCATACTAGTGGAACTTTG-TGTG----------------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcttctccaattctgtatgtcattagttctgatgttggatgtttcttttgcagGTTTAGGCTGGAGTTTTCCATGTGATATTTGGAGTGTTGGCTGTATTCTTGTTGAGCTATGCTCTGTTAGATCTCTTCACACACTTTATTTTTCTAGTAC
                            ttctgat  putative branch site (score: 3)
                                         tgtttctttt  putative PPT
                                           tttctttt  TA-rich tract