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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gctatgtggatgggaactatcattttgagctttttaattcgtcatgtgatggtagttttttcaaagttgtaacatagttagattttcatgatttctgcagAATTCAGTGTTTTTGGAGCATCAATGTCAGGTGCTTGCATTGGGTTTCTTTTTCACAACAGATACAGGGCCTCCGTGGTTATGAGCCGGGTTGGTTCTTT

Basic information

species Zea mays
transcript GRMZM2G093278_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G093278_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os01g11260.1 (Oryza sativa), 3'ss of exon 6
gctatgtggatgggaactat-cattttgagctttttaattcgtcatgtgatggtagttttttcaaagttgtaacatagttagattttcatgattt--ctgcagAATTCAGTGTTTTTGGAGCATCAATGTCAGGTGCTTGCATTGGGTTTCTTTTTCACAACAGATACAGGGCCTCCGTGGTTATGAGCCGGGTTGGTTCTTT
| | |  |  ||  |    | |||| | || || |   ||    || || | ||  || |    ||||  |  | || | || | ||||   |||  |||||||| | |||||||||||||||||||||||||| ||||||| ||| |||||||| || |||||||| ||||||||  | |||||| | || ||||| |||||
gattttcgactgctactagtgcattattag-ttgtaggtttaatatctg-tagtgattctactgaagtaatggc-taataagctattcacctttttactgcagAAATGAGTGTTTTTGGAGCATCAATGTCAGGCGCTTGCACTGGCTTTCTTTTCCATAACAGATATAGGGCCTCAATTGTTATGGGACGTGTTGGCTCTTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76285411|gb|DV024979.1|DV024979
EST:     TGCTTTGGCACTCATAGCACTATCTGTTGCAGCTCTCCCGATTTGCTCTG                         AATTCAGTGTTTTTGGAGCATCAATGTCAGGTGCTTGCATTGGGTTTCTTT
genomic: TGCTTTGGCACTCATAGCACTATCTGTTGCAGCTCTCCCGATTTGCTCTGgtaaactatt ... atttctgcagAATTCAGTGTTTTTGGAGCATCAATGTCAGGTGCTTGCATTGGGTTTCTTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgatggtagttttttcaaagttgtaacatagttagattttcatgatttctgcagAATTCAGTGTTTTTGGAGCATCAATGTCAGGTGCTTGCATTGGGTTTCTTTTTCACAACAGATACAGGGCCTCCGTGGTTATGAGCCGGGTTGGTTCTTT
                     ttgtaac  putative branch site (score: 2)
                                              tttctgc  putative PPT
          ttttttcaaa  TA-rich tract