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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttggtcaaaataaattagaaatgatcaattaaaacttctgtttcctatattccttcgttactttttgtctcgtggttttcaatttctaaccacattgcagATTTTGATTTTTCATCTAATAACCAGTACATAGCTTCATGCTCTCTGGATAAAACTGTGCGAGTATGGGAAATCTCTAAAGGCACATGCATCAGGGTCGT

Basic information

species Zea mays
transcript GRMZM2G093239_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G093239_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os01g56860.1 (Oryza sativa), 3'ss of exon 5
---ttggtcaaaataaattagaaatgatcaattaaaacttctgtttcctatattccttcgttactttttgtctcgtggttttcaatttctaaccacattgcagATTTTGATTTTTCATCTAATAACCAGTACATAGCTTCATGCTCTCTGGATAAAACTGTGCGAGTATGGGAAATCTCTAAAGGCACATGCATCAGGGTCGT
   | | |  |    ||||| ||  ||  |||| |   || |  ||    ||||  |||  |  ||  | | | |||   ||| | |||||||  |||| |||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||| || |||||||||| ||||| |||||||| || |||||||| ||
atttggatggatgctaattaaaacagaataattgag--ttgtacttatc-tattatttcaatgtttagtatttagtgagcttcgaattctaactgcattacagATTTTGATTTTTCATCTAATAACCAGTACATAGCTTCGTGCTCCATGGATAAAACTATGAGAGTATGGGAGATCTCAAAAGGCACTTGTATCAGGGTTGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatattccttcgttactttttgtctcgtggttttcaatttctaaccacattgcagATTTTGATTTTTCATCTAATAACCAGTACATAGCTTCATGCTCTCTGGATAAAACTGTGCGAGTATGGGAAATCTCTAAAGGCACATGCATCAGGGTCGT
                                      ttctaac  putative branch site (score: 1)
                              ttttcaatttctaa  TA-rich tract