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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatctcttttctctggccccatcaatatagaatgagtatcatttctcttgctgtcatatcatagatagctgtaatatctatctatttgtatggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTACAACCTTTTGGAACATGAGTTTCTACCTCTGGATCTTGCATCAAAAGTGC

Basic information

species Zea mays
transcript GRMZM2G093050_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G093050_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os01g03070.2 (Oryza sativa), 3'ss of exon 6
tatctcttttctctggccccatcaatatagaatgagtatcatttctcttgc----tgtcatatcatagatagctgtaatatctatctatttgtatggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTACAACCTTTTGGAACATGAGTTTCTACCTCTGGATCTTGCATCAAAAGTGC
  |    ||  |  ||    ||| |  ||   ||     ||||| || |||    |   || ||     | |   |    |   |  || | |||   || |||||  ||||||| ||| || | |||||||| ||||| ||   |||||| ||||||||||||||||| || ||||| ||||||||||| | ||| ||||  |
--tagggttggtagggttgtatcca-gtaatttgtactccatttatcatgcataattgaatttctcttcttgtgcttgcttgacttgatatttataaatt-tagGCTGCCAAAGGTGTCATTGCCTGTGCTTCACAAGATGTCAAAGATTTATACAACCTTTTGGAACACGATTTTCTTCCTCTGGATCTCGTATCCAAAGCAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211125693|gb|FL425311.1|FL425311
EST:     CCTTCCAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGT
genomic: CCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGT
EST: gi|211382701|gb|FL417972.1|FL417972
EST:     CCTTCAAGACCATATCTTCTATCANAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: CCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|211201856|gb|FL394599.1|FL394599
EST:     GCCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: GCCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|211045104|gb|FL385029.1|FL385029
EST:     CCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTA
genomic: CCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCC-TCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTA
EST: gi|30087958|gb|CB886163.1|CB886163
EST:     CCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: CCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|211273865|gb|FL424030.1|FL424030
EST:     CCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: CCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|31361475|gb|CD445832.1|CD445832
EST:     CCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: CCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|32934017|gb|CF038829.1|CF038829
EST:     CCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: CCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|211085801|gb|FL424023.1|FL424023
EST:     GCCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: GCCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|211288261|gb|FL396094.1|FL396094
EST:     CCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: CCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|211065685|gb|FL394006.1|FL394006
EST:     GCCTTCAAGACCATATCTTCTATCANAGTTG                         GCCTCCAAAGGAGTCCTTTCATGNGCTTCCCAAGAAGNGCGAGATTTGTAC
genomic: GCCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|101389303|gb|EB816606.1|EB816606
EST:     AGGGAAATGCCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: AGGGAAATGCCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|211411277|gb|FL421620.1|FL421620
EST:     CCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATG
genomic: CCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATG
EST: gi|211376834|gb|FL401929.1|FL401929
EST:     GCCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: GCCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|211515632|gb|FL372285.1|FL372285
EST:     CCTTCAAGACCNTATCTTCTATCAGAGTTG                         GGCCTCCAAAGGAG
genomic: CCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagG-CCTCCAAAGGAG
EST: gi|211116333|gb|FL427476.1|FL427476
EST:     CCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: CCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|211484709|gb|FL383652.1|FL383652
EST:     GCCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: GCCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|211076746|gb|FL399059.1|FL399059
EST:     CCTTCAAGACCATATCTTCTATCANAGNTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: CCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|211527408|gb|FL405478.1|FL405478
EST:     GCCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: GCCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|211351487|gb|FL422809.1|FL422809
EST:     GCCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: GCCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|211048425|gb|FL057235.1|FL057235
EST:     GCCTTCAAGACCATATCTTCTATCANAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: GCCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|211199329|gb|FL397381.1|FL397381
EST:     GCCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: GCCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|211479170|gb|FL394819.1|FL394819
EST:     GCCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: GCCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|211381637|gb|FL369263.1|FL369263
EST:     GCCTTCAAGACCNTATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: GCCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|33096394|gb|CF056388.1|CF056388
EST:     CCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGGGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: CCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|211413828|gb|FL421637.1|FL421637
EST:     GCCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGNGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: GCCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|67013371|gb|CO442120.1|CO442120
EST:     CCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: CCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|211376841|gb|FL401936.1|FL401936
EST:     CCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: CCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|21987851|gb|BQ779379.1|BQ779379
EST:     CCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: CCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|32932539|gb|CF037351.1|CF037351
EST:     CCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGT
genomic: CCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGT
EST: gi|211231554|gb|FL371572.1|FL371572
EST:     CCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: CCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|211221384|gb|FL382568.1|FL382568
EST:     CCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGNGCGAGATTTGTAC
genomic: CCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|211487374|gb|FL376562.1|FL376562
EST:     CCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: CCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|211008300|gb|FL374933.1|FL374933
EST:     CCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: CCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|211382707|gb|FL417978.1|FL417978
EST:     GCCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: GCCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|211146398|gb|FL424897.1|FL424897
EST:     CCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: CCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|211045896|gb|FL416937.1|FL416937
EST:     GCCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: GCCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|101381939|gb|EB813027.1|EB813027
EST:     CCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: CCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|87155878|gb|DY400667.1|DY400667
EST:     CCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: CCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|32930116|gb|CF034928.1|CF034928
EST:     CCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGT
genomic: CCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttgctgtcatatcatagatagctgtaatatctatctatttgtatggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTACAACCTTTTGGAACATGAGTTTCTACCTCTGGATCTTGCATCAAAAGTGC
                          taatatctatctattt  TA-rich tract