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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgataaccaaggattacataacatgcaaagagaaatacatgtaaactcggcttgcaattcctaattgtgttttatttccatcctcttgttactttgtagGCTCTGGACTCGTTCAACACGGCTGTGGTTTCTCCTGTATACTACGTGATGTTCACCATTCTTACCATTGTTGCAAACATGATCATGTACAAG

Basic information

species Zea mays
transcript GRMZM2G092991_T03
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G092991_T03 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os02g29510.2 (Oryza sativa), 3'ss of exon 7
ttgataaccaaggattacataacatgcaaagagaaatacatgtaaactcggcttgcaat-----tcctaattgtgttttatttccatcctcttgttactttgtagGCTCTGGACTCGTTCAACACGGCTGTGGTTTCTCCTGTATACTACGTGATGTTCACCATTCTTACCATTGTTGCAAACATGATCATGTACAAG
  |||| |  || | ||  ||      ||    |||| |||  |  ||      | |||     |   || | ||||| | |||   |   ||  |   ||| |||| |||||||| || || || |||||||| |||||||| |||||||||||||||||||| ||||| ||| |||| |||||||| |||||||||
--gata-cgtagtactatttattg-ataattctaaat-cataaaggctgctgcagaaatatgtgtttgaactctgtttgagttctgactatttaatttgttgcagGCACTGGACTCATTTAATACAGCTGTGGTCTCTCCTGTGTACTACGTGATGTTCACCATACTTACTATTTTTGCTAACATGATTATGTACAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actcggcttgcaattcctaattgtgttttatttccatcctcttgttactttgtagGCTCTGGACTCGTTCAACACGGCTGTGGTTTCTCCTGTATACTACGTGATGTTCACCATTCTTACCATTGTTGCAAACATGATCATGTACAAG
              tcctaat  putative branch site (score: 2)
                         ttttatttccatcctc  putative PPT
                 taattgtgttttattt  TA-rich tract