Sequence
atgc intronic sequence ATGC exonic sequencegtgattcatatgctctaattctcttcgacccgacaggtttagctgcaccagccattgctgcaggatttggtgctctagctccaacactgggcacacttgtccctttcatagGGGCTAGTGGATTTGCTGCTATGGCTGCTGCGGCAGGATCTGTTGCTGGCTCTGTGGCAGTTGCTGCCTCATTTGGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G092776_T04 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os03g02170.1 (Oryza sativa), 3'ss of exon 4
----------------------------------------------------------------gtgattcatatgctcta-attctcttc-gacccgacaggtttagctgcaccagccattgctgcaggatttggtgctctagctccaacactgggcacacttgtccctttcatagGGGCTAGTGGATTTGCTGCTATGGCTGCTGCGGCAGGATCTGTTGCTGGCTCTGTGGCAGTTGCTGCCTCATTTGGAG
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gtatgaaaaaacttcagaaattctgctggacgctgaacatctgaactagtttctgtcgctcatattactctaaacggttgatattctcttccaacttgacagGTTTAGCTGCTCCAGCAATTGCTGCAGGGTTTGGTGCTCTTGCTCCAACCCTGGGCACACTTGTCCCTGTTATAGGAGCTAGCGGATTTGCTGCTATGGC-----------------------------------------------------
upper sequence: GRMZM2G092776_T04 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA11G07870.1 (Glycine max), 3'ss of exon 3
-------------------------------------------------------------------gtgattcatatgctctaattctcttcgacccgacaggtttagctgcaccagccattgctgcaggatttggtgctctagctccaacactgggcacacttgtccctttcatagGGGCTAGTGGATTTGCTGCTATGGCTGCTGCGGCAGGATCTGTTGCTGGCTCTGTGGCAGTTGCTGCCTCATTTGGAG
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gtgtgaataccttaacatcttttctgtgttctggaatatataatttcaaattggatgagtttccttgttgatttgattgtttttgtttttatgcatttaacagGATTAGCTGCCCCAGCAATTGCTGCAGGGCTTGGTGCTTTGGCTCCAACCTTGGGTACTCTGATTCCTGTAATTGGAGCAAATGAATTTGCTGCAGCTGC-----------------------------------------------------
upper sequence: GRMZM2G092776_T04 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA16G24310.1 (Glycine max), 3'ss of exon 4
-----------------------------------------------------------------------gtgattcatatgctctaattctcttcgacc---cgacaggtttagctgcaccagccattgctgcaggatttggtgctctagctccaacactgggcacacttgtccctttcatagGGGCTAGTGGATTTGCTGCTATGGCTGCTGCGGCAGGATCTGTTGCTGGCTCTGTGGCAGTTGCTGCCTCATTTGGAG
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gtatggattggagaccttgttgtcttttctaactgtattgtggaacatataatttccagatgaataaacttttactggatatgattgtttttattttaaccattcaacagGGTTAGCTGCACCAGCCATTGCTGCAGGTCTTGGTGCTTTAGCTCCAACTTTGGGTACTCTGATCCCTGTAATTGGTGCAAGTGGGTTTGCTGCAGCTGC-----------------------------------------------------
upper sequence: GRMZM2G092776_T04 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA01G37420.1 (Glycine max), 3'ss of exon 4
-------------------------------------------------------------------gtgattcatatgctctaattctcttcgacccgacaggtttagctgcaccagccattgctgcaggatttggtgctctagctccaacactgggcacacttgtccctttcatagGGGCTAGTGGATTTGCTGCTATGGCTGCTGCGGCAGGATCTGTTGCTGGCTCTGTGGCAGTTGCTGCCTCATTTGGAG
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gtatgaataccttaacatcttttctgtgttctggaatatatgatttcaaattggatgagtttccttgttgatttaattgtttttgtttttatgcatttaacagGATTAGCTGCCCCAGCAATTGCTGCAGGGCTTGGTGCTTTGGCTCCAACCTTGGGTACTCTGATCCCCGTAATTGGAGCAAGTGGATTTGCTGCAGCTGC-----------------------------------------------------
upper sequence: GRMZM2G092776_T04 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA02G05680.1 (Glycine max), 3'ss of exon 4
--------------------------------------------------------------------------gtgattcatat-gctctaattctcttcgacccgacaggtttagctgcaccagccattgctgcaggatttggtgctctagctccaacactgggcacacttgtccctttcatagGGGCTAGTGGATTTGCTGCTATGGCTGCTGCGGCAGGATCTGTTGCTGGCTCTGTGGCAGTTGCTGCCTCATTTGGAG
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gtatggattggagaccttgttgtcttttctaactgtattgtggaatatataattttcagatgaataaatttttactgaatagaattgttttttattttaacctttcaacagGGTTAGCTGCACCAGCCATTGCTGCAGGTCTTGGTGCATTAGCTCCAACTTTGGGTACTCTGATCCCTGTAATTGGTGCAAGTGGATTTGCTGC---GGCTGC--------------------------------------------------
upper sequence: GRMZM2G092776_T04 (Zea mays), 3'ss of exon 6
lower sequence: AT4G36210.2 (Arabidopsis thaliana), 3'ss of exon 3
----------------------------------------------------gtgattcatat-gctctaattctcttcgacccgacaggtttagctgcaccagccattgctgcaggatttggtgctctagctccaacactgggcacacttgtccctttcatagGGGCTAGTGGATTTGCTGCTATGGCTGCTGCGGCAGGATCTGTTGCTGGCTCTGTGGCAGTTGCTGCCTCATTTGGAG
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gtacggcaaattcaaagcgttaacattctaaattagagcatattttgaactggttacctatcttacatttacatggttatattcaacagGATTGGCTGCTCCAGCTATAGCTGCAGGATTTGGTGCATTGGCACCAACACTGGGCACAATTATTCCGGTGATTGGAGCTGGGGGTTTTGCTGCTGCGGC-----------------------------------------------------
upper sequence: GRMZM2G092776_T04 (Zea mays), 3'ss of exon 6
lower sequence: Vv04s0023g02940.t01 (Vitis vinifera), 3'ss of exon 4
------------------------------------------------------------gtgattcatatgctctaattc-tcttcgaccc---gacaggtttagctgcaccagccattgctgcaggatttggtgctctagctccaacactgggcacacttgtccctttcatagGGGCTAGTGGATTTGCTGCTATGGCTGCTGCGGCAGGATCTGTTGCTGGCTCTGTGGCAGTTGCTGCCTCATTTGGAG
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gcaaccatagtaggacgtagtaaatatgaaatttctcttcaaaagcttcagacagcatgactgtttttgacttttcagttcatttttcactcttcaacagGTTTGGCTGCTCCAGCAATTGCTGCAGGATTTAGTGCATTAGCTCCTACTCTAGGCACAATAATTCCGGTGATTGGAGCAAGTGGGTTTGCAGCAGCTGC-----------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116827223|gb|EC871106.1|EC871106EST: ATCTAATGAAATGCTGAACATCTTGGCATCATTTGGACACACTACACCAG GGGCTAGTGGATTTGCTGCTATGGCTGCTGCGGCAGGATCTGTTGCTGGCT
genomic: ATCTAATGAAATGCTGAACATCTTGGCATCATTTGGACACACTACACCAGgtgattcata ... cctttcatagGGGCTAGTGGATTTGCTGCTATGGCTGCTGCGGCAGGATCTGTTGCTGGCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gctgcaggatttggtgctctagctccaacactgggcacacttgtccctttcatagGGGCTAGTGGATTTGCTGCTATGGCTGCTGCGGCAGGATCTGTTGCTGGCTCTGTGGCAGTTGCTGCCTCATTTGGAG
cacttgtccctttc CT-rich tract
tttcata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgattcatatgctctaattctcttcgacccgacaggtttagctgcaccagccattgctgcaggatttggtgctctagctccaacactgggcacacttgtccctttcatagGGGCTAGTGGATTTGCTGCTATGGCTGCTGCGGCAGGATCTGTTGCTGGCTCTGTGGCAGTTGCTGCCTCATTTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG