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...gcaacttgtaccgctcagattctgcccccgtccctgttttattttaactggccatgcaccttacgccatctactgtggtctgtggttgaaaattactcagGGCCGGATGCATCTATTTCTGTTCTGGTGGATTCAATCTATGCTTCACAGACCGCAGGAGATGGTTACTGTGGCAATCTGTCTGACTATGAG
species | Zea mays |
transcript | GRMZM2G092497_T04 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTGGCTATTACCAGATGCG GGCCGGATGCATCTATTTCTGTTCTGGTGGATTCAATCTATGCTTCACAGAEST: gi|18450762|gb|BM429040.1|BM429040
genomic: CTGGCTATTACCAGATGCGgtgtgctctc ... aattactcagGGCCGGATGCATCTATTTCTGTTCTGGTGGATTCAATCTATGCTTCACAGA
EST: TAAAATGGGGTTTCCTGAAGACGAGGCTGCACTGGCTATTACCAGATGCG GGCCGGATGCATCTATTTCTGTTCTGGTGGATTCAATCTATGCTTCACAGAEST: gi|78109829|gb|DV528245.1|DV528245
genomic: TAAAATGGGGTTTCCTGAAGACGAGGCTGCACTGGCTATTACCAGATGCGgtgtgctctc ... aattactcagGGCCGGATGCATCTATTTCTGTTCTGGTGGATTCAATCTATGCTTCACAGA
EST: TAAAATGGGGTTTCCTGAAGACGAGGCTGCACTGGCTATTACCAGATGCG GGCCGGATGCATCEST: gi|18963248|gb|BM660326.1|BM660326
genomic: TAAAATGGGGTTTCCTGAAGACGAGGCTGCACTGGCTATTACCAGATGCGgtgtgctctc ... aattactcagGGCCGGATGCATC
EST: TAAAATGGGGTTTCCTGAAGACGAGGCTGCACTGGCTATTACCAGATGCG GGCCGGATGCATCTATTTCTGTTCTGGTGGATTCAATCTATGCTTCACAGAEST: gi|18648720|gb|BM497539.1|BM497539
genomic: TAAAATGGGGTTTCCTGAAGACGAGGCTGCACTGGCTATTACCAGATGCGgtgtgctctc ... aattactcagGGCCGGATGCATCTATTTCTGTTCTGGTGGATTCAATCTATGCTTCACAGA
EST: TAAAA-GGGGTTTCCTGAAGACGAGGCTGCACTGGCTATTACCAGATGCG GGCCGGATGCATCTATTTCTGTTCTGGTGGATTCAATCTATGCTTCACAGAEST: gi|211528668|gb|FL445662.1|FL445662
genomic: TAAAATGGGGTTTCCTGAAGACGAGGCTGCACTGGCTATTACCAGATGCGgtgtgctctc ... aattactcagGGCCGGATGCATCTATTTCTGTTCTGGTGGATTCAATCTATGCTTCACAGA
EST: TAAAATGGGGTTTCCTGAAGACGAGGCTGCACTGGCTATTACCAGATGCG GGCCGGATGCATCTATTTCTGTTCTGGTGGATTCAATCTATGCTTCACAGA
genomic: TAAAATGGGGTTTCCTGAAGACGAGGCTGCACTGGCTATTACCAGATGCGgtgtgctctc ... aattactcagGGCCGGATGCATCTATTTCTGTTCTGGTGGATTCAATCTATGCTTCACAGA
aactggccatgcaccttacgccatctactgtggtctgtggttgaaaattactcagGGCCGGATGCATCTATTTCTGTTCTGGTGGATTCAATCTATGCTTCACAGACCGCAGGAGATGGTTACTGTGGCAATCTGTCTGACTATGAG
ttgaaaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaacttgtaccgctcagattctgcccccgtccctgttttattttaactggccatgcaccttacgccatctactgtggtctgtggttgaaaattactcagGGCCGGATGCATCTATTTCTGTTCTGGTGGATTCAATCTATGCTTCACAGACCGCAGGAGATGGTTACTGTGGCAATCTGTCTGACTATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG