1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...agttttcttgactgcagtggcatataggagtactactatctcgatggtggatccatagtaataattgttttgcttgtttttcattcctttttggatgcagGAGGATGAGCTAGGATTGCCTACAGTGCCACAAGCATCCATTCGTACATAATCAAGCAGAATCACGTTTCTTGCAGTCAACGATATAAAGGAAGTCGTAT
species | Zea mays |
transcript | GRMZM2G092468_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TACCTGCTGCACCAACTGGCCATGCAGCAGTCCCAGCAAACCAGCAGCAG GAGGATGAGCTAGGATTGCCTACAGTGCCACAAGCATCCATTCGTACATAAEST: gi|18165330|gb|BM335169.1|BM335169
genomic: TACCTGCTGCACCAACTGGCCATGCAGCAGTCCCGGCAAACCAGCAGCAGgtagtgaaac ... ttggatgcagGAGGATGAGCTAGGATTGCCTACAGTGCCACAAGCATCCATTCGTACATAA
EST: TACCTGCTGCACCAACTGGCCATGCAGCAGTCCCAGCAAACCAGCAGCAG GAGGATGAGCTAGGATTGCCTACAGTGCCACAAGCATCCATTCGTACATAAEST: gi|32843415|gb|CD983096.1|CD983096
genomic: TACCTGCTGCACCAACTGGCCATGCAGCAGTCCCGGCAAACCAGCAGCAGgtagtgaaac ... ttggatgcagGAGGATGAGCTAGGATTGCCTACAGTGCCACAAGCATCCATTCGTACATAA
EST: TACCTGCTGCACCAACTGGCCATGCAGCAGTCCCAGCAAACCAGCAGCAG GAGGATGAGCTAGGATTGCCTACAGTGCCACAAGCATCCATTCGTEST: gi|211056133|gb|FL465296.1|FL465296
genomic: TACCTGCTGCACCAACTGGCCATGCAGCAGTCCCGGCAAACCAGCAGCAGgtagtgaaac ... ttggatgcagGAGGATGAGCTAGGATTGCCTACAGTGCCACAAGCATCCATTCGT
EST: TACCTGCTGCACCAACTGGCCATGCAGCAGTCCCAGCAAACCAGCAGCAG GAGGATGAGCTAGGATTGCCTACAGTGCCACAAGCATCCATTCGTACATAAEST: gi|32850682|gb|CD990363.1|CD990363
genomic: TACCTGCTGCACCAACTGGCCATGCAGCAGTCCCGGCAAACCAGCAGCAGgtagtgaaac ... ttggatgcagGAGGATGAGCTAGGATTGCCTACAGTGCCACAAGCATCCATTCGTACATAA
EST: TACCTGCTGCACCAACTGGCCATGCAGCAGTCCCAGCAAACCAGCAGCAG GAGGATGAGCTAGGATTGCCTACAGTGCCACAAGCATCCATTCGTEST: gi|13557942|gb|BG549298.1|BG549298
genomic: TACCTGCTGCACCAACTGGCCATGCAGCAGTCCCGGCAAACCAGCAGCAGgtagtgaaac ... ttggatgcagGAGGATGAGCTAGGATTGCCTACAGTGCCACAAGCATCCATTCGT
EST: TACCTGCTGCACCAACTGGCCATGCAGCAGTCCCGGCAAACCAGCAGCAG GAGGATGAGCTAGGATTGCCTACAGTGCCACAAGCATCCATTCGTACATAAEST: gi|32844108|gb|CD983789.1|CD983789
genomic: TACCTGCTGCACCAACTGGCCATGCAGCAGTCCCGGCAAACCAGCAGCAGgtagtgaaac ... ttggatgcagGAGGATGAGCTAGGATTGCCTACAGTGCCACAAGCATCCATTCGTACATAA
EST: TACCTGCTGCACCAACTGGCCATGCAGCAGTCCCAGCAAACCAGCAGCAG GAGGATGAGCTAGGATTGCCTACAGTGCCACAAGCATCCATTCGTAEST: gi|32843203|gb|CD982884.1|CD982884
genomic: TACCTGCTGCACCAACTGGCCATGCAGCAGTCCCGGCAAACCAGCAGCAGgtagtgaaac ... ttggatgcagGAGGATGAGCTAGGATTGCCTACAGTGCCACAAGCATCCATTCGTA
EST: TACCTGCTGCACCAACTGGCCATGCAGCAGTCCCAGCAAACCAGCAGCAG GAGGATGAGCTAGGATTGCCTACAGTACCACAAGCATCCATTCGTACEST: gi|87151661|gb|DY396450.1|DY396450
genomic: TACCTGCTGCACCAACTGGCCATGCAGCAGTCCCGGCAAACCAGCAGCAGgtagtgaaac ... ttggatgcagGAGGATGAGCTAGGATTGCCTACAGTGCCACAAGCATCCATTCGTAC
EST: TACCTGCTGCACCAACTGGCCATGCAGCAGTCCCAGCAAACCAGCAGCAG GAGGATGAGCTAGGATTGCCEST: gi|116828810|gb|EC861202.1|EC861202
genomic: TACCTGCTGCACCAACTGGCCATGCAGCAGTCCCGGCAAACCAGCAGCAGgtagtgaaac ... ttggatgcagGAGGATGAGCTAGGATTGCC
EST: TACCTGCTGCACCAACTGGCCATGCAGCAGTCCCAGCAAACCAGCAGCAG GAGGATGAGCTAGGATTGCCTACAGTGCCACAAGCATCCATTCGTACATAAEST: gi|32844472|gb|CD984153.1|CD984153
genomic: TACCTGCTGCACCAACTGGCCATGCAGCAGTCCCGGCAAACCAGCAGCAGgtagtgaaac ... ttggatgcagGAGGATGAGCTAGGATTGCCTACAGTGCCACAAGCATCCATTCGTACATAA
EST: TACCTGCTGCACCAACTGGCCATGCAGCAGTCCCAGCAAACCAGCAGCAG GAGGATGAGCTAGGATTGCCTACAGTGCCACAAGCATCCATTCGTEST: gi|24934372|gb|CA452590.1|CA452590
genomic: TACCTGCTGCACCAACTGGCCATGCAGCAGTCCCGGCAAACCAGCAGCAGgtagtgaaac ... ttggatgcagGAGGATGAGCTAGGATTGCCTACAGTGCCACAAGCATCCATTCGT
EST: TACCTGCTGCACCAACTGGCCATGCAGCAGTCCCGGCAAACCAGCAGCAG GAGGATGAGCTAGGATTGCCTACAGTGCCACAAGCATCCATTCGTEST: gi|32830794|gb|CD970472.1|CD970472
genomic: TACCTGCTGCACCAACTGGCCATGCAGCAGTCCCGGCAAACCAGCAGCAGgtagtgaaac ... ttggatgcagGAGGATGAGCTAGGATTGCCTACAGTGCCACAAGCATCCATTCGT
EST: TACCTGCTGCACCAACTGGCCATGCAGCAGTCCCAGCAAACCAGCAGCAG GAGGATGAGCTAGGATTGCCTACAGTGCCACAAGCATCCATTCGTAEST: gi|211406647|gb|FL439010.1|FL439010
genomic: TACCTGCTGCACCAACTGGCCATGCAGCAGTCCCGGCAAACCAGCAGCAGgtagtgaaac ... ttggatgcagGAGGATGAGCTAGGATTGCCTACAGTGCCACAAGCATCCATTCGTA
EST: TACCTGCTGCACCAACTGGCCATGCAGCAGTCCCGGCAAACCAGCAGCAG GAGGATGAGCTAGGATTGCCTACAGTGCCACAAGCATCCATTCGTACATAAEST: gi|211406648|gb|FL439011.1|FL439011
genomic: TACCTGCTGCACCAACTGGCCATGCAGCAGTCCCGGCAAACCAGCAGCAGgtagtgaaac ... ttggatgcagGAGGATGAGCTAGGATTGCCTACAGTGCCACAAGCATCCATTCGTACATAA
EST: TACCTGCTGCACCAACTGGCCATGCAGCAGTCCCGGCAAACCAGCAGCAG GAGGATGAGCTAGGATTGCCTACAGTGCCACAAGCATCCATTTGTACATAAEST: gi|32843530|gb|CD983211.1|CD983211
genomic: TACCTGCTGCACCAACTGGCCATGCAGCAGTCCCGGCAAACCAGCAGCAGgtagtgaaac ... ttggatgcagGAGGATGAGCTAGGATTGCCTACAGTGCCACAAGCATCCATTCGTACATAA
EST: TACCTGCTGCACCAACTGGCCAT-CAGCAGTCCCAGCAAACCAGCAGCAG GAGGATGAGCTAGGATTGCCTACAGT-CCACAAGCATCCATTCGTACEST: gi|71437048|gb|DR818098.1|DR818098
genomic: TACCTGCTGCACCAACTGGCCATGCAGCAGTCCCGGCAAACCAGCAGCAGgtagtgaaac ... ttggatgcagGAGGATGAGCTAGGATTGCCTACAGTGCCACAAGCATCCATTCGTAC
EST: TACCTGCTGCACCAACTGGCCATGCAGCAGTCCCGGCAAACCAGCAGCAG GAGGATGAGCTAGGATTGCCTACAGTGGCACAAGCATCCATTCGTACATAAEST: gi|18168644|gb|BM338484.1|BM338484
genomic: TACCTGCTGCACCAACTGGCCATGCAGCAGTCCCGGCAAACCAGCAGCAGgtagtgaaac ... ttggatgcagGAGGATGAGCTAGGATTGCCTACAGTGCCACAAGCATCCATTCGTACATAA
EST: TACCTGCTGCACCAACTGGCCATGCAGCAGTCCCGGCAAACCAGCAGCAG GAGGATGAGCTAGGATTGCCTACAGTGCCACAAGCATCCATTCGTACATAAEST: gi|211019544|gb|FL384186.1|FL384186
genomic: TACCTGCTGCACCAACTGGCCATGCAGCAGTCCCGGCAAACCAGCAGCAGgtagtgaaac ... ttggatgcagGAGGATGAGCTAGGATTGCCTACAGTGCCACAAGCATCCATTCGTACATAA
EST: TACCTGCTGCACCAACTGGCCATGCAGCAGTCCCGGCAAACCAGCAGCAG GAGGATGAGCTAGGATTGCCTACAGTGCCACAAGCATCCATTCGTACATAAEST: gi|211394823|gb|FL369347.1|FL369347
genomic: TACCTGCTGCACCAACTGGCCATGCAGCAGTCCCGGCAAACCAGCAGCAGgtagtgaaac ... ttggatgcagGAGGATGAGCTAGGATTGCCTACAGTGCCACAAGCATCCATTCGTACATAA
EST: ACCTGCTGCACCAAACTGGCCATGCAGCAGTCCCGGCAAAC-AGCAGCAG GAGGATGAGCTAGGATTTGCCTACAGTGC-ACAAGCATCCATTCEST: gi|161585881|gb|EY956853.1|EY956853
genomic: ACCTGCTGCACCAA-CTGGCCATGCAGCAGTCCCGGCAAACCAGCAGCAGgtagtgaaac ... ttggatgcagGAGGATGAGCTAGGATT-GCCTACAGTGCCACAAGCATCCATTC
EST: CGGCAAACCAGCAGCAG GAGGATGAGCTAGGATTGCCTACAGTGCCACAAGCATCCATTCGTACATAAEST: gi|32831503|gb|CD971181.1|CD971181
genomic: CGGCAAACCAGCAGCAGgtagtgaaac ... ttggatgcagGAGGATGAGCTAGGATTGCCTACAGTGCCACAAGCATCCATTCGTACATAA
EST: TACCTGCTGCACCAACTGGCCATGCAGCAGTCCCAGCAAACCAGCAGCAG GAGGATGAGCTAGGATTGCCTACAGTGCCACAAGCATCCATTCGTEST: gi|32843863|gb|CD983544.1|CD983544
genomic: TACCTGCTGCACCAACTGGCCATGCAGCAGTCCCGGCAAACCAGCAGCAGgtagtgaaac ... ttggatgcagGAGGATGAGCTAGGATTGCCTACAGTGCCACAAGCATCCATTCGT
EST: TACCTGCTGCACCAACTGGCCATGCAGCAGTCCCAGCAAACCAGCAGCAG GAGGATGAGCTAGGATTGCCTACAGTGCCACAAGCATCCATTCGTEST: gi|32843474|gb|CD983155.1|CD983155
genomic: TACCTGCTGCACCAACTGGCCATGCAGCAGTCCCGGCAAACCAGCAGCAGgtagtgaaac ... ttggatgcagGAGGATGAGCTAGGATTGCCTACAGTGCCACAAGCATCCATTCGT
EST: TACCTGCTGCACCAACTGGCCATGCAGCAGTCCCAGCAAACCAGCAGCAG GAGGATGAGCTAGGATTGCCTACAGTGCCACAAGCATCCATTCGT
genomic: TACCTGCTGCACCAACTGGCCATGCAGCAGTCCCGGCAAACCAGCAGCAGgtagtgaaac ... ttggatgcagGAGGATGAGCTAGGATTGCCTACAGTGCCACAAGCATCCATTCGT
ggtggatccatagtaataattgttttgcttgtttttcattcctttttggatgcagGAGGATGAGCTAGGATTGCCTACAGTGCCACAAGCATCCATTCGTACATAATCAAGCAGAATCACGTTTCTTGCAGTCAACGATATAAAGGAAGTCGTAT
ttgttttgcttgtttt CT-rich tract
atagtaataattgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttttcttgactgcagtggcatataggagtactactatctcgatggtggatccatagtaataattgttttgcttgtttttcattcctttttggatgcagGAGGATGAGCTAGGATTGCCTACAGTGCCACAAGCATCCATTCGTACATAATCAAGCAGAATCACGTTTCTTGCAGTCAACGATATAAAGGAAGTCGTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- -tttcttg
- - - - - actgcag
- - - - - - - - - - - - - - - - - - - - - gatggtg