Sequence
atgc intronic sequence ATGC exonic sequence...gcccctgtctattccttgtatattatcttgctaatatttggccgagtgtggcagatgtacctgcttgttaattccataaaccagtgtttttttgctgcagCAGTTGTATGGAAGATTGTCTGAGCTTCTAGGACTTAATGACCATTTAATTCTACTCAATGTGATTGTTGGCAAAATTGCTACAAATATGAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G092261_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os03g42050.1 (Oryza sativa), 3'ss of exon 15
gcccctgtctattccttg-tatattatcttgctaatatttggccgagtgtggcagatgtacctgctt--gttaattcc-ataaaccagtgtttttttgctgcagCAGTTGTATGGAAGATTGTCTGAGCTTCTAGGACTTAATGACCATTTAATTCTACTCAATGTGATTGTTGGCAAAATTGCTACAAATATGAA--------
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gttagaagaaaccgaataatagaacataacaattataattttcttttttttcttgatgtacctttttttgtaaatccccatcaagttttacttctttgctgcagCAGTTGTATGCAAGATTATCTGAGCTTCTTGGACTGAATGACCATTTAGTTTTACTCAATGTCATTGTTGGGAAAATAGCAACTAATCTGAAGTGCTATGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|29167813|gb|CB411073.1|CB411073EST: AAAGTTTCAGAAGGTCATATGTAGGAGACCAAGCTATGCATTCTTCAAAG CAGTCGTATGGAAGATTGTCTGAGCTTCTAGGACTTAATGACCATTTAATT
genomic: AAAGTTTCAGAAGGTCATATGTAGGAGACCAAGCTATGCATTCTTCAAAGgttaatacac ... tttgctgcagCAGTTGTATGGAAGATTGTCTGAGCTTCTAGGACTTAATGACCATTTAATT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtgtggcagatgtacctgcttgttaattccataaaccagtgtttttttgctgcagCAGTTGTATGGAAGATTGTCTGAGCTTCTAGGACTTAATGACCATTTAATTCTACTCAATGTGATTGTTGGCAAAATTGCTACAAATATGAA
tgttaat putative branch site (score: 3)
tttttttgct putative PPT
ttgttaatt TA-rich tract