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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcccctgtctattccttgtatattatcttgctaatatttggccgagtgtggcagatgtacctgcttgttaattccataaaccagtgtttttttgctgcagCAGTTGTATGGAAGATTGTCTGAGCTTCTAGGACTTAATGACCATTTAATTCTACTCAATGTGATTGTTGGCAAAATTGCTACAAATATGAA

Basic information

species Zea mays
transcript GRMZM2G092261_T02
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G092261_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os03g42050.1 (Oryza sativa), 3'ss of exon 15
gcccctgtctattccttg-tatattatcttgctaatatttggccgagtgtggcagatgtacctgctt--gttaattcc-ataaaccagtgtttttttgctgcagCAGTTGTATGGAAGATTGTCTGAGCTTCTAGGACTTAATGACCATTTAATTCTACTCAATGTGATTGTTGGCAAAATTGCTACAAATATGAA--------
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gttagaagaaaccgaataatagaacataacaattataattttcttttttttcttgatgtacctttttttgtaaatccccatcaagttttacttctttgctgcagCAGTTGTATGCAAGATTATCTGAGCTTCTTGGACTGAATGACCATTTAGTTTTACTCAATGTCATTGTTGGGAAAATAGCAACTAATCTGAAGTGCTATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29167813|gb|CB411073.1|CB411073
EST:     AAAGTTTCAGAAGGTCATATGTAGGAGACCAAGCTATGCATTCTTCAAAG                         CAGTCGTATGGAAGATTGTCTGAGCTTCTAGGACTTAATGACCATTTAATT
genomic: AAAGTTTCAGAAGGTCATATGTAGGAGACCAAGCTATGCATTCTTCAAAGgttaatacac ... tttgctgcagCAGTTGTATGGAAGATTGTCTGAGCTTCTAGGACTTAATGACCATTTAATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtggcagatgtacctgcttgttaattccataaaccagtgtttttttgctgcagCAGTTGTATGGAAGATTGTCTGAGCTTCTAGGACTTAATGACCATTTAATTCTACTCAATGTGATTGTTGGCAAAATTGCTACAAATATGAA
                    tgttaat  putative branch site (score: 3)
 tttttttgct  putative PPT
 ttgttaatt  TA-rich tract