1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...agaaatattctacaaagcatgtttccagaatcgagcaatttcaaatatcaagagagggttttcccatttgtttcttttaactgggttctttgtgctccagCCAGAGCCAAAAATTCAGTACACCCTGAAGGCCATTGGAGGAAGCCTAACTGCAGTTCCTGGACTTTCTGACATGATTGAT
species | Zea mays |
transcript | GRMZM2G092129_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCTGTTGTTGTGGCTCTCCTTGCTGAT CCAGAGCCAAAAATTCAGTACACCCTSAAGGCCATTGGAGSAAGCCTAACTEST: gi|211335355|gb|FL444766.1|FL444766
genomic: GCTGTTGTTGTGGCTCTCCTTGCTGATgcaagtatct ... tgtgctccagCCAGAGCCAAAAATTCAGTACACCCTGAAGGCCATTGGAGGAAGCCTAACT
EST: CTGAAGACATCCCTTGCATTTCTGCTGTTGTTGTGGCTCTCCTTGCTGAT CCAGAGCCAAAAATTCAGTACACCCTGAAGGCCATTGGAGGAAGCCTAACTEST: gi|148971559|gb|EE022272.2|EE022272
genomic: CTGAAGACATCCCTTGCATTTCTGCTGTTGTTGTGGCTCTCCTTGCTGATgcaagtatct ... tgtgctccagCCAGAGCCAAAAATTCAGTACACCCTGAAGGCCATTGGAGGAAGCCTAACT
EST: TGAAGACATCCCTTGCATTTCTGCTGGGTGT-GTGGCTCTCCTTGCTGAT CCAGAGCCAAAAAATCAGTACACCCTGAAGGCCAEST: gi|211220820|gb|FL457379.1|FL457379
genomic: TGAAGACATCCCTTGCATTTCTGCTGT-TGTTGTGGCTCTCCTTGCTGATgcaagtatct ... tgtgctccagCCAGAGCCAAAAATTCAGTACACCCTGAAGGCCA
EST: CTGAAGACATCCCTTGCATTTCTGCTGTTGTTGTGGCTCTCCTTGCTGAT CCAGAGCCAAAAATTCAGTACACCCTGAAGGCCATTGGAGGAAGCCTAACTEST: gi|71331353|gb|DR802511.1|DR802511
genomic: CTGAAGACATCCCTTGCATTTCTGCTGTTGTTGTGGCTCTCCTTGCTGATgcaagtatct ... tgtgctccagCCAGAGCCAAAAATTCAGTACACCCTGAAGGCCATTGGAGGAAGCCTAACT
EST: CTGAAGACATCCCTTGCATTTCTGCTGTTGGTGTGGCTCTCCTTGCTGAT CCAGAGCCAAAAATTCAGTACACCCTGGAGGTCATTGGAGGAAAGC-TAACEST: gi|111145863|gb|EE258112.1|EE258112
genomic: CTGAAGACATCCCTTGCATTTCTGCTGTTGTTGTGGCTCTCCTTGCTGATgcaagtatct ... tgtgctccagCCAGAGCCAAAAATTCAGTACACCCTGAAGGCCATTGGAGGAA-GCCTAAC
EST: CTGAAGACATCCCTTGCATTTCTGCTGTTGTTGTGGCTCTCCTTGCTGAT CCAGAGCCAAAAATTCAGTACACCCTGAAGGCCATTGGAGGAAGCCTAACT
genomic: CTGAAGACATCCCTTGCATTTCTGCTGTTGTTGTGGCTCTCCTTGCTGATgcaagtatct ... tgtgctccagCCAGAGCCAAAAATTCAGTACACCCTGAAGGCCATTGGAGGAAGCCTAACT
tatcaagagagggttttcccatttgtttcttttaactgggttctttgtgctccagCCAGAGCCAAAAATTCAGTACACCCTGAAGGCCATTGGAGGAAGCCTAACTGCAGTTCCTGGACTTTCTGACATGATTGAT
ttttaac putative branch site (score: 191)
ttctttgt putative PPT
atttgtttcttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaaatattctacaaagcatgtttccagaatcgagcaatttcaaatatcaagagagggttttcccatttgtttcttttaactgggttctttgtgctccagCCAGAGCCAAAAATTCAGTACACCCTGAAGGCCATTGGAGGAAGCCTAACTGCAGTTCCTGGACTTTCTGACATGATTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG