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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cataggacggcacttatttcttaatgtggattgttacggttttagtttttccctaataaataataaattaattattgttatcgttttcattttgacatagGCACTAAGGAGAATGCAGCGAGTTGGGATGAGACTTAATGTCTCTGCATATACTGTTGCTATTAAG

Basic information

species Zea mays
transcript GRMZM2G092123_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G092123_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os03g17634.1 (Oryza sativa), 3'ss of exon 6
cataggacggcacttattt-cttaatgtggattgttacggttttagttttt----ccctaataaataataaattaattattgttatcgttttcattttgacatagGCACTAAGGAGAATGCAGCGAGTTGGGATGAGACTTAATGTCTCTGCATATACTGTTGCTATTAAG
            |||  || || ||  |||| | | | | |||||  |||        |||||  |   | | ||||  |     || ||||  ||| | || ||||||| || |||||||| || ||||| |||| |||||||||| |||||||||||||||||||||||
-----cttattccttgcttgctaaacatggactatgatgattttacctttaagtgtagtaatattttgaacaataatattaaccttcctttttgtttgggcacagGCACTCAGAAGAATGCAACGTGTTGGAATGAAACTTAATGTCACTGCATATACTGTTGCTATTAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttccctaataaataataaattaattattgttatcgttttcattttgacatagGCACTAAGGAGAATGCAGCGAGTTGGGATGAGACTTAATGTCTCTGCATATACTGTTGCTATTAAG
                                            ttttgac  putative branch site (score: 3)
                                      ttttcatttt  CT-rich tract
        taataaataataaatt  TA-rich tract