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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaagaatatagaaaacagaatcttatgtgcttataaatggagatgaggccatcatgcttatttttgtcagtctagttttttactcccactttgtatgtagGTTTGCAGCTGCTTTGATCCGCCAGAAACTGGATTGGTGGGTGATGAATGTTGTTCCTATTAGTGAGCCAAATACACTACCTGTAATTTTTGATCGGGGG

Basic information

species Zea mays
transcript GRMZM2G092120_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G092120_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os01g62800.1 (Oryza sativa), 3'ss of exon 6
aaagaatatagaaaacagaatcttatgtgcttataaatggagatgaggccatcatgcttatttttgt-cagtctagttttttact--cccactttgtatgtagGTTTGCAGCTGCTTTGATCCGCCAGAAACTGGATTGGTGGGTGATGAATGTTGTTCCTATTAGTGAGCCAAATACACTACCTGTAATTTTTGATCGGGGG
      |    || ||| |||    ||  |||||     |    | |      ||  |   |||||  || | |    |||| ||  |  | ||| |||| |||||||||||||| |||||    |  ||||| ||||| ||||||||||||||||||||| ||||||||||||| ||||| |||||||| | ||| ||||| 
---ttctcacaaagacaaaataaattggacttattttctgtttggtgcgtgatatattctgttttgcgcaatatctcattttgcttgctaattttttatgcagGTTTGCAGCTGCATTGATTAATCGTAAACTTGATTGCTGGGTGATGAATGTTGTTCCTGTTAGTGAGCCAAACACACTGCCTGTAATCTATGACCGGGGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71418430|gb|DR804440.1|DR804440
EST:     AGGAAGTTCAAAGTCCGGAATGTAATGGACATGAGGGCTGGATTTGGAGG                         GTTTGCAGCTGCTTTGATCCGCCAGAAACTGGATTGGTGGGTGATGAATGT
genomic: AGGAAGTTCAAAGTCCGGAATGTAATGGACATGAGGGCTGGATTTGGAGGgtatttttct ... ttgtatgtagGTTTGCAGCTGCTTTGATCCGCCAGAAACTGGATTGGTGGGTGATGAATGT
EST: gi|76912991|gb|DV164963.1|DV164963
EST:     AGGAAGTTCAAAGTCCGGAATGTAATGGACATGAGGGCTGGATTTGGAGG                         GTTTGCAGCTGCTTTGATCCGCCAGAAACTGGATTGGTGGGTGATGAATGT
genomic: AGGAAGTTCAAAGTCCGGAATGTAATGGACATGAGGGCTGGATTTGGAGGgtatttttct ... ttgtatgtagGTTTGCAGCTGCTTTGATCCGCCAGAAACTGGATTGGTGGGTGATGAATGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggccatcatgcttatttttgtcagtctagttttttactcccactttgtatgtagGTTTGCAGCTGCTTTGATCCGCCAGAAACTGGATTGGTGGGTGATGAATGTTGTTCCTATTAGTGAGCCAAATACACTACCTGTAATTTTTGATCGGGGG
                              ttttttactcccactt  CT-rich tract
            ttatttttgt  TA-rich tract