1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ctcgagccattgttgtgttctcagttgatgtaatttcattattcaaacttcttgttgggctgtctaatggaatgcaaaaaaaatacttgaaaaatgacagATAGCAGATCCAGCAGCAATTGAGGCAATGGTAGATAAAGTAATTGCTGATAATCCAAAGCAACTTGAGCAGTACCGTGCTGGAAAAACTAAGCTACAAG
species | Zea mays |
transcript | GRMZM2G091560_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CCAAAGGCGGAACAGTTAAGGCTGTGATAGAAGAGAAAGATTTGGTTCAG ATAGCAGATCCAGCAGCAATTGAGGCAATGGTAGATAAAGTAATTGCTGATEST: gi|78022483|gb|DV490870.1|DV490870
genomic: CCAAAGGCGGAACAGTTAAGGCTGTGATAGAAGAGAAAGATTTGGTTCAGgtaactgtgc ... aaaatgacagATAGCAGATCCAGCAGCAATTGAGGCAATGGTAGATAAAGTAATTGCTGAT
EST: CCAAAGGCGGAACAGTTAAGGCTGTGATAGAAGAGAAAGATTTGGTTCAG ATAGCAGATCCAGCAGCAATTGAGGCAATGGTAGATAAAGTAATTGCTGATEST: gi|12968520|gb|BG265466.1|BG265466
genomic: CCAAAGGCGGAACAGTTAAGGCTGTGATAGAAGAGAAAGATTTGGTTCAGgtaactgtgc ... aaaatgacagATAGCAGATCCAGCAGCAATTGAGGCAATGGTAGATAAAGTAATTGCTGAT
EST: CCAAAGGCGGAACAGTTAAGGCTGTGATAGAAGAGAAAGATTTGGTTCAG ATAGCAGATCCAGCAGCAATTGAGGCAATGGTAGATAAAGTAATTGCTGATEST: gi|211486172|gb|FL326647.1|FL326647
genomic: CCAAAGGCGGAACAGTTAAGGCTGTGATAGAAGAGAAAGATTTGGTTCAGgtaactgtgc ... aaaatgacagATAGCAGATCCAGCAGCAATTGAGGCAATGGTAGATAAAGTAATTGCTGAT
EST: CCAAAGGCGGAACAGTTAAGGCTGTGATAGAAGAGAAAGATTTGGTTCAG ATAGCAGATCCAGCAGCAATTGAGGCAATGGTAGATAAAGTAATTGCTGATEST: gi|4647395|gb|AI622470.1|AI622470
genomic: CCAAAGGCGGAACAGTTAAGGCTGTGATAGAAGAGAAAGATTTGGTTCAGgtaactgtgc ... aaaatgacagATAGCAGATCCAGCAGCAATTGAGGCAATGGTAGATAAAGTAATTGCTGAT
EST: CCAAAGGCGGAACAGTTAAGGCTGTGATAGAAGAGAAAGATTTGGTTCAG ATAGCAGATCCAGCAGCAATTGAGGCAATGGTAGATAAAGTAATTGCTGATEST: gi|5915470|gb|AW053111.1|AW053111
genomic: CCAAAGGCGGAACAGTTAAGGCTGTGATAGAAGAGAAAGATTTGGTTCAGgtaactgtgc ... aaaatgacagATAGCAGATCCAGCAGCAATTGAGGCAATGGTAGATAAAGTAATTGCTGAT
EST: CCAAAGGCGGAACAGTTAAGGCTGTGATAGAAGAGAAAGATTTGGTTCAG ATAGCAGATCCAGCAGCAATTGAGGCAATGGTAGATAAAGTAATTGCTGATEST: gi|5713973|gb|AI943958.1|AI943958
genomic: CCAAAGGCGGAACAGTTAAGGCTGTGATAGAAGAGAAAGATTTGGTTCAGgtaactgtgc ... aaaatgacagATAGCAGATCCAGCAGCAATTGAGGCAATGGTAGATAAAGTAATTGCTGAT
EST: CCAAAGGCGGAACAGTTAAGGCTGTGATAGAAGAGAAAGATTTGGTTCAG ATAGCAGATCCAGCAGCAATTGAGGCAATGGTAGATAAAGTAATTGCTGATEST: gi|211183316|gb|FL321581.1|FL321581
genomic: CCAAAGGCGGAACAGTTAAGGCTGTGATAGAAGAGAAAGATTTGGTTCAGgtaactgtgc ... aaaatgacagATAGCAGATCCAGCAGCAATTGAGGCAATGGTAGATAAAGTAATTGCTGAT
EST: CCAAAGGCGGAACAGTTAAGGCTGTGATAGAAGAGAAAGATTTGGTTCAG ATAGCAGATCCAGCAGCAATTGAGGCAATGGTAGATAAAGTAATTGCTGATEST: gi|211362610|gb|FL353331.1|FL353331
genomic: CCAAAGGCGGAACAGTTAAGGCTGTGATAGAAGAGAAAGATTTGGTTCAGgtaactgtgc ... aaaatgacagATAGCAGATCCAGCAGCAATTGAGGCAATGGTAGATAAAGTAATTGCTGAT
EST: CCAAAGGCGGAACAGTTAAGGCTGTGATAGAAGAGAAAGATTTGGTTCAG ATAGCAGATCCAGCAGCAATTGAGGCAATGGTAGATAAAGTAATTGCTGATEST: gi|5929050|gb|AW056342.1|AW056342
genomic: CCAAAGGCGGAACAGTTAAGGCTGTGATAGAAGAGAAAGATTTGGTTCAGgtaactgtgc ... aaaatgacagATAGCAGATCCAGCAGCAATTGAGGCAATGGTAGATAAAGTAATTGCTGAT
EST: CCAAAGGCGGAACAGTTAAGGCTGTGATAGAAGAGAAAGATTTGGTTCAG ATAGCAGATCCAGCAGCAATTGAGGCAATGGTAGATAAAGTAATTGCTGATEST: gi|211158667|gb|FL318097.1|FL318097
genomic: CCAAAGGCGGAACAGTTAAGGCTGTGATAGAAGAGAAAGATTTGGTTCAGgtaactgtgc ... aaaatgacagATAGCAGATCCAGCAGCAATTGAGGCAATGGTAGATAAAGTAATTGCTGAT
EST: CCAAAGGCGGAACAGTTAAGGCTGTGATAGAAGAGAAAGATTTGGTTCAG ATAGCAGATCCAGCAGCAATTGAGGCAATGGTAGATAAAGTAATTGCTGATEST: gi|211031236|gb|FL345766.1|FL345766
genomic: CCAAAGGCGGAACAGTTAAGGCTGTGATAGAAGAGAAAGATTTGGTTCAGgtaactgtgc ... aaaatgacagATAGCAGATCCAGCAGCAATTGAGGCAATGGTAGATAAAGTAATTGCTGAT
EST: CCAAAGGCGGAACAGTTAAGGCTGTGATAGAAGAGAAAGATTTGGTTCAG ATAGCAGATCCAGCAGCAATTGAGGCAATGGTAGATAAAGTAATTGCTGATEST: gi|211274217|gb|FL334363.1|FL334363
genomic: CCAAAGGCGGAACAGTTAAGGCTGTGATAGAAGAGAAAGATTTGGTTCAGgtaactgtgc ... aaaatgacagATAGCAGATCCAGCAGCAATTGAGGCAATGGTAGATAAAGTAATTGCTGAT
EST: CAAAGGCGGAACAGTTAAGGCTGTGATAGAAGAGAAAGATTTGGGTTCAG ATAGCAGATCCAGCAGCAATTGAGGCAATGGTAGATAAAGTAATTGCTGAEST: gi|33096769|gb|CF056739.1|CF056739
genomic: CAAAGGCGGAACAGTTAAGGCTGTGATAGAAGAGAAAGATTTGG-TTCAGgtaactgtgc ... aaaatgacagATAGCAGATCCAGCAGCAATTGAGGCAATGGTAGATAAAGTAATTGCTGA
EST: CCAAAGGCGGAACAGTTAAGGCTGTGATAGAAGAGAAAGATTTGGTTCAG ATAGCAGATCCAGCAGCAATTGAGGCAATGGTAGATAAAGTAATTGCTGATEST: gi|94478769|gb|EB707727.1|EB707727
genomic: CCAAAGGCGGAACAGTTAAGGCTGTGATAGAAGAGAAAGATTTGGTTCAGgtaactgtgc ... aaaatgacagATAGCAGATCCAGCAGCAATTGAGGCAATGGTAGATAAAGTAATTGCTGAT
EST: CCAAAGGCGGAACAGTTAAGGCTGTGATAGAAGAGAAAGATTTGGTTCAG ATAGCAGATCCAGCAGCAATTGAGGCAATGGTAGATAAAGTAATTGCTGAT
genomic: CCAAAGGCGGAACAGTTAAGGCTGTGATAGAAGAGAAAGATTTGGTTCAGgtaactgtgc ... aaaatgacagATAGCAGATCCAGCAGCAATTGAGGCAATGGTAGATAAAGTAATTGCTGAT
aacttcttgttgggctgtctaatggaatgcaaaaaaaatacttgaaaaatgacagATAGCAGATCCAGCAGCAATTGAGGCAATGGTAGATAAAGTAATTGCTGATAATCCAAAGCAACTTGAGCAGTACCGTGCTGGAAAAACTAAGCTACAAG
gtctaat putative branch site (score: 63)
aaaaaaaatacttgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcgagccattgttgtgttctcagttgatgtaatttcattattcaaacttcttgttgggctgtctaatggaatgcaaaaaaaatacttgaaaaatgacagATAGCAGATCCAGCAGCAATTGAGGCAATGGTAGATAAAGTAATTGCTGATAATCCAAAGCAACTTGAGCAGTACCGTGCTGGAAAAACTAAGCTACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - -ttgttgt
- - - - - - - - - - - - -tgatgta
- - - - - - - - - - - - - - - - -tttcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa