1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gcagtgtgttcgaatgaactaatgcactgtcacaagcattgaatgaagcaccatgaaagttgtggctatgtgccattttaatgaactattttttttgcagTGTATCATTGATCATCAAGCTCTTCCCCGCCTCCTGAATTTATTGACACAGAACCACAAGAAAAGCATTAAGAAAGAGGCATGCTGGACGATTTCAAATA
species | Zea mays |
transcript | GRMZM2G091119_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGTAACTGTAGATGATCAGCAAACTCAG TGTATCATTGATCATCAAGCTCTTCCCCGCCTCCTGAATTTATTGACACAGEST: gi|32789789|gb|CD942025.1|CD942025
genomic: TTGTAACTGGAGATGATCAGCAAACTCAGgtggggcttt ... ttttttgcagTGTATCATTGATCATCAAGCTCTTCCCCGCCTCCTGAATTTATTGACACAG
EST: CTCTACGAACTGTTGGGAACATTGTAACTGGAGATGATCAGCAAACTCAG TGTATCATTGATCATCAAGCTCTTCCCCGCCTCCTGAATTTATTGACACAGEST: gi|60397633|gb|DN230449.1|DN230449
genomic: CTCTACGAACTGTTGGGAACATTGTAACTGGAGATGATCAGCAAACTCAGgtggggcttt ... ttttttgcagTGTATCATTGATCATCAAGCTCTTCCCCGCCTCCTGAATTTATTGACACAG
EST: CTCTACGAACTGTTGGGAACATTGTAACTGGAGATGATCAGCAAACTCAG TGTATCATTGATCATCAAGCTCTTCCCCGCCTCCTGAATTTATTGACACAG
genomic: CTCTACGAACTGTTGGGAACATTGTAACTGGAGATGATCAGCAAACTCAGgtggggcttt ... ttttttgcagTGTATCATTGATCATCAAGCTCTTCCCCGCCTCCTGAATTTATTGACACAG
aagcaccatgaaagttgtggctatgtgccattttaatgaactattttttttgcagTGTATCATTGATCATCAAGCTCTTCCCCGCCTCCTGAATTTATTGACACAGAACCACAAGAAAAGCATTAAGAAAGAGGCATGCTGGACGATTTCAAATA
ttttaat putative branch site (score: 413)
ctatttttttt putative PPT
attttaatgaactatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcagtgtgttcgaatgaactaatgcactgtcacaagcattgaatgaagcaccatgaaagttgtggctatgtgccattttaatgaactattttttttgcagTGTATCATTGATCATCAAGCTCTTCCCCGCCTCCTGAATTTATTGACACAGAACCACAAGAAAAGCATTAAGAAAGAGGCATGCTGGACGATTTCAAATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA