1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaacaagaatagtggcatattttgacacatcattttgattacattcacttggcaatcttacctatttagttttttttgtttattttgtatttattgcactctactctactgtggccatagATCTGGCTGGGTGGAACACCAAACCAGAGTACGCTAGCAGAATCATTTATGGACAAAGTGAAGCTTGATGACATCGAGAAGGTTTTGGAACCTCTCTTTA
species | Zea mays |
transcript | GRMZM2G090338_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CATATATGGCAGAGCTTGGTTTTGTTGGTGATGGCCCAAAAAGTTACCAG ATCTGGCTGGGTGGAACACCAAACCAGAGTACGCTAGCAGAATCATTTATGEST: gi|30087026|gb|CB885234.1|CB885234
genomic: CATATATGGCAGAGCTTGGTTTTGTTGGTGATGGCCCAAAAAGTTACCAGgtaacaagaa ... gtggccatagATCTGGCTGGGTGGAACACCAAACCAGAGTACGCTAGCAGAATCATTTATG
EST: CATATATGGCAGAGCTTGGTTTTGTTGGTGATGGCCCAAAAAGTTACCAG ATCTGGCTGGGTGGAACACCAAACCAGAGTACGCTAGCAGAATCATTTATGEST: gi|32840970|gb|CD980651.1|CD980651
genomic: CATATATGGCAGAGCTTGGTTTTGTTGGTGATGGCCCAAAAAGTTACCAGgtaacaagaa ... gtggccatagATCTGGCTGGGTGGAACACCAAACCAGAGTACGCTAGCAGAATCATTTATG
EST: CATATATGGCAGAGCTTGGTTTCGTTGGTGATGGCCCAAAAAGTTACCAG ATCTGGCTGGGTGGAACACCAAACCAGAGTEST: gi|32841089|gb|CD980770.1|CD980770
genomic: CATATATGGCAGAGCTTGGTTTTGTTGGTGATGGCCCAAAAAGTTACCAGgtaacaagaa ... gtggccatagATCTGGCTGGGTGGAACACCAAACCAGAGT
EST: CATATATGGCAGAGCTTGGTTTCGTTGGTGATGGCCCAAAAAGTTACCAG ATCTGGCTGGGTGGAACACCAAACCAGAGTEST: gi|60339740|gb|DN206713.1|DN206713
genomic: CATATATGGCAGAGCTTGGTTTTGTTGGTGATGGCCCAAAAAGTTACCAGgtaacaagaa ... gtggccatagATCTGGCTGGGTGGAACACCAAACCAGAGT
EST: CATATATGGCAGAGCTTGGTTTTGTTGGTGATGGCCCAAAAAGTTACCAG ATCTGGCTGGGTGGAACACCAAACCAGAGTACGCTAGCAGAATCATTTATGEST: gi|76015451|gb|DT942621.1|DT942621
genomic: CATATATGGCAGAGCTTGGTTTTGTTGGTGATGGCCCAAAAAGTTACCAGgtaacaagaa ... gtggccatagATCTGGCTGGGTGGAACACCAAACCAGAGTACGCTAGCAGAATCATTTATG
EST: CATATATGGCAGAGCTTGGTTTTGTTGGTGATGGCCCAAAAAGTTACCAG ATCTGGCTGGGTGGAACACCAAACCAGAGTACGCTAGCAGAATCATTTATGEST: gi|60349845|gb|DN216818.1|DN216818
genomic: CATATATGGCAGAGCTTGGTTTTGTTGGTGATGGCCCAAAAAGTTACCAGgtaacaagaa ... gtggccatagATCTGGCTGGGTGGAACACCAAACCAGAGTACGCTAGCAGAATCATTTATG
EST: CATATATGGCAGAGCTTGGTTTTGTTGGTGATGGCCCAAAAAGTTACCAG ATCTGGCTGGGTGGAACACCAAACCAGAGTACGCTAGCAGAATCATTTATGEST: gi|67030464|gb|CO459213.1|CO459213
genomic: CATATATGGCAGAGCTTGGTTTTGTTGGTGATGGCCCAAAAAGTTACCAGgtaacaagaa ... gtggccatagATCTGGCTGGGTGGAACACCAAACCAGAGTACGCTAGCAGAATCATTTATG
EST: CATATATGGCAGAGCTTGGTTTTGTTGGTGATGGCCCAAAAAGTTACCAG ATCTGGCTGGGTGGAACACCAAACCAGAGTACGCTAGCAGAATCATTTATGEST: gi|78114427|gb|DV532816.1|DV532816
genomic: CATATATGGCAGAGCTTGGTTTTGTTGGTGATGGCCCAAAAAGTTACCAGgtaacaagaa ... gtggccatagATCTGGCTGGGTGGAACACCAAACCAGAGTACGCTAGCAGAATCATTTATG
EST: CATATATGGCAGAGCTTGGTTTTGTTGGTGATGGCCCAAAAAGTTACCAG ATCTGGCTGGGTGGAACACCAAACCAGAGTACGCTAGCAGAATCATTTATGEST: gi|71330578|gb|DR802057.1|DR802057
genomic: CATATATGGCAGAGCTTGGTTTTGTTGGTGATGGCCCAAAAAGTTACCAGgtaacaagaa ... gtggccatagATCTGGCTGGGTGGAACACCAAACCAGAGTACGCTAGCAGAATCATTTATG
EST: CATATATGGCAGAGCTTGGTTTTGTTGGTGATGGCCCAAAAAGTTACCAG ATCTGGCTGGGTGGAACACCAAACCAGAGTACGCTAGCAGAATCATTTATGEST: gi|60355018|gb|DN221991.1|DN221991
genomic: CATATATGGCAGAGCTTGGTTTTGTTGGTGATGGCCCAAAAAGTTACCAGgtaacaagaa ... gtggccatagATCTGGCTGGGTGGAACACCAAACCAGAGTACGCTAGCAGAATCATTTATG
EST: CATATATGGCAGAGCTTGGTTTTGTTGGTGATGGCCCAAAAAGTTACCAG ATCTGGCTGGGTGGAACACCAAACCAGAGTACGCTAGCAGAATCATTTATGEST: gi|31909623|gb|CD651011.1|CD651011
genomic: CATATATGGCAGAGCTTGGTTTTGTTGGTGATGGCCCAAAAAGTTACCAGgtaacaagaa ... gtggccatagATCTGGCTGGGTGGAACACCAAACCAGAGTACGCTAGCAGAATCATTTATG
EST: CATATATGGCAGAGCTTGGTTTTGTTGGTGATGGCCCAAAAAGTTACCAG ATCTGGCTGGGTGGAACACCAAACCAGAGTACGCTAGCAGAATCATTTATGEST: gi|47961924|gb|CN844633.1|CN844633
genomic: CATATATGGCAGAGCTTGGTTTTGTTGGTGATGGCCCAAAAAGTTACCAGgtaacaagaa ... gtggccatagATCTGGCTGGGTGGAACACCAAACCAGAGTACGCTAGCAGAATCATTTATG
EST: CATATATGGCAGAGCTTGGTTTTGTTGGTGATGGCCCAAAAAGTTACCAG ATCTGGCTGGGTGGAACACCAAACCAGAGTACGCTAGCAGAATCATTTATGEST: gi|60400045|gb|DN232852.1|DN232852
genomic: CATATATGGCAGAGCTTGGTTTTGTTGGTGATGGCCCAAAAAGTTACCAGgtaacaagaa ... gtggccatagATCTGGCTGGGTGGAACACCAAACCAGAGTACGCTAGCAGAATCATTTATG
EST: CATATATGGCAGAGCTTGGTTTTGTTGGTGATGGCCCAAAAAGTTACCAG ATCTGGCTGGGTGGAACACCAAACCAGAGTACGCTAGCAGAATCATTTATGEST: gi|110540151|gb|EE044071.1|EE044071
genomic: CATATATGGCAGAGCTTGGTTTTGTTGGTGATGGCCCAAAAAGTTACCAGgtaacaagaa ... gtggccatagATCTGGCTGGGTGGAACACCAAACCAGAGTACGCTAGCAGAATCATTTATG
EST: CATATATGGCAGAGCTTGGTTTTGTTGGTGATGGCCCAAAAAGTTACCAG ATCTGGCTGGGTGGAACACCAAACCAGAGTACGCTAGCAGAATCATTTATGEST: gi|60343246|gb|DN210219.1|DN210219
genomic: CATATATGGCAGAGCTTGGTTTTGTTGGTGATGGCCCAAAAAGTTACCAGgtaacaagaa ... gtggccatagATCTGGCTGGGTGGAACACCAAACCAGAGTACGCTAGCAGAATCATTTATG
EST: CATATATGGCAGAGCTTGGTTTTGTTGGTGATGGCCCAAAAAGTTACCAG ATCTGGCTGGGTGGAACACCAAACCAGAGTACGCTAGCAGAATCATTTATGEST: gi|211330976|gb|FL100738.1|FL100738
genomic: CATATATGGCAGAGCTTGGTTTTGTTGGTGATGGCCCAAAAAGTTACCAGgtaacaagaa ... gtggccatagATCTGGCTGGGTGGAACACCAAACCAGAGTACGCTAGCAGAATCATTTATG
EST: CATATATGGCAGAGCTTGGTTTTGTTGGTGATGGCCCAAAAAGTTACCAG ATCTGGCTGGGTGGAACACCAAACCAGAGTACGCTAGCAGAATCATTTATGEST: gi|76917902|gb|DV167065.1|DV167065
genomic: CATATATGGCAGAGCTTGGTTTTGTTGGTGATGGCCCAAAAAGTTACCAGgtaacaagaa ... gtggccatagATCTGGCTGGGTGGAACACCAAACCAGAGTACGCTAGCAGAATCATTTATG
EST: CATATATGGCAGAGCTTGGTTTTGTTGGTGATGGCCCAAAAAGTTACCAG ATCTGGCTGGGTGGAACACCAAACCAGAGTACGCTAGCAGAATCATTTATGEST: gi|148947629|gb|EC893109.2|EC893109
genomic: CATATATGGCAGAGCTTGGTTTTGTTGGTGATGGCCCAAAAAGTTACCAGgtaacaagaa ... gtggccatagATCTGGCTGGGTGGAACACCAAACCAGAGTACGCTAGCAGAATCATTTATG
EST: CATATATGGCAGAGCTTGGTTTTGTTGGTGATGGCCCAAAAAGTTACCAG ATCTGGCTGGGTGGAACACCAAACCAGAGTACGCTAGCAGAATCATTTATGEST: gi|33091872|gb|CF051866.1|CF051866
genomic: CATATATGGCAGAGCTTGGTTTTGTTGGTGATGGCCCAAAAAGTTACCAGgtaacaagaa ... gtggccatagATCTGGCTGGGTGGAACACCAAACCAGAGTACGCTAGCAGAATCATTTATG
EST: CATATATGGCAGAGCTTGGTTTCGTTGGTGATGGCCCAAAAAGTTACCAG ATCTGGCTGGGTGGAACACCAAACCAGAGTEST: gi|32840868|gb|CD980549.1|CD980549
genomic: CATATATGGCAGAGCTTGGTTTTGTTGGTGATGGCCCAAAAAGTTACCAGgtaacaagaa ... gtggccatagATCTGGCTGGGTGGAACACCAAACCAGAGT
EST: CATATATGGCAGAGCTTGGTTTCGTTGGTGATGGCCCAAAAAGTTACCAG ATCTGGCTGGGTGGAACACCAAACCAGAGTEST: gi|149085314|gb|EE174820.2|EE174820
genomic: CATATATGGCAGAGCTTGGTTTTGTTGGTGATGGCCCAAAAAGTTACCAGgtaacaagaa ... gtggccatagATCTGGCTGGGTGGAACACCAAACCAGAGT
EST: CATATATGGCAGAGCTTGGTTTTGTTGGTGATGGCCCAAAAAGTTACCAG ATCTGGCTGGGTGGAACACCAAACCAGAGTACGCTAGCAGAATCATTTATGEST: gi|211113699|gb|FL397738.1|FL397738
genomic: CATATATGGCAGAGCTTGGTTTTGTTGGTGATGGCCCAAAAAGTTACCAGgtaacaagaa ... gtggccatagATCTGGCTGGGTGGAACACCAAACCAGAGTACGCTAGCAGAATCATTTATG
EST: TTGGTTTTGTTGGTGATGGCCCAAAAAGTTACCAG ATCTGGCTGGGTGGAACACCAAACCAGAGTACGCTAGCAGAATCATTTATGEST: gi|32834834|gb|CD974512.1|CD974512
genomic: TTGGTTTTGTTGGTGATGGCCCAAAAAGTTACCAGgtaacaagaa ... gtggccatagATCTGGCTGGGTGGAACACCAAACCAGAGTACGCTAGCAGAATCATTTATG
EST: CATATATGGCAGAGCTTGGTTTCGTTGGTGATGGCCCAAAAAGTTACCAG ATCTGGCTGGGTGGAACACCAAACCAGAGTEST: gi|113861224|gb|DW980782.1|DW980782
genomic: CATATATGGCAGAGCTTGGTTTTGTTGGTGATGGCCCAAAAAGTTACCAGgtaacaagaa ... gtggccatagATCTGGCTGGGTGGAACACCAAACCAGAGT
EST: CATATATGGCAGAGCTTGGTTTTGTTGGTGATGGCCCAAAAAGTTACCAG ATCTGGCTGGGTGGAACACC
genomic: CATATATGGCAGAGCTTGGTTTTGTTGGTGATGGCCCAAAAAGTTACCAGgtaacaagaa ... gtggccatagATCTGGCTGGGTGGAACACC
ttagttttttttgtttattttgtatttattgcactctactctactgtggccatagATCTGGCTGGGTGGAACACCAAACCAGAGTACGCTAGCAGAATCATTTATGGACAAAGTGAAGCTTGATGACATCGAGAAGGTTTTGGAACCTCTCTTTA
tttttttgtttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacaagaatagtggcatattttgacacatcattttgattacattcacttggcaatcttacctatttagttttttttgtttattttgtatttattgcactctactctactgtggccatagATCTGGCTGGGTGGAACACCAAACCAGAGTACGCTAGCAGAATCATTTATGGACAAAGTGAAGCTTGATGACATCGAGAAGGTTTTGGAACCTCTCTTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC