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...caccgaccataaagtcaaaagattcatgtatctgaagcctcaaataagtagtatacatccataatcacttggatttaaagtttctttaattgcattgcagCTTTGCTTTTTGCGTCAATTCAAGGGCTCCATAATAAGGTCAGACTATTTGGCACTGAGGTTGGGCTTTGTCACA
species | Zea mays |
transcript | GRMZM2G089259_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTAACAATGCTTCTCATCCATGGAGCAAAAATAAAATACTTATTTGGATG CTTTGCTTTTTGCGTCAATTCAAGGGCTCCATAATAAGGTCAGACTATTTGEST: gi|76012907|gb|DT940077.1|DT940077
genomic: TTAACAATGCTTCTCATCCATGGAGCAAAAATAAAATACTTATTTGGATGgtaagattcc ... tgcattgcagCTTTGCTTTTTGCGTCAATTCAAGGGCTCCATAATAAGGTCAGACTATTTG
EST: TTAACAATGCTTCTCATCCATGGAGCAAAAATAAAATACTTATTTGGATG CTTTGCTTTTTGCGTCAATTCAAGGGCTCCATAATAAGGTCAGACTATTTGEST: gi|60356662|gb|DN223635.1|DN223635
genomic: TTAACAATGCTTCTCATCCATGGAGCAAAAATAAAATACTTATTTGGATGgtaagattcc ... tgcattgcagCTTTGCTTTTTGCGTCAATTCAAGGGCTCCATAATAAGGTCAGACTATTTG
EST: TTAACAATGCTTCTCATCCATGGAGCAAAAATAAAATACTTATTTGGATG CTTTGCTTTTTGCGTCAATTCAAGGGCTCCATAATAAGGTCAGACTATTTGEST: gi|148994788|gb|EE034233.2|EE034233
genomic: TTAACAATGCTTCTCATCCATGGAGCAAAAATAAAATACTTATTTGGATGgtaagattcc ... tgcattgcagCTTTGCTTTTTGCGTCAATTCAAGGGCTCCATAATAAGGTCAGACTATTTG
EST: TTAACAATGCTTCTCATCCATGGAGCAAAAATAAAATACTTATTTGGATG CTTTGCTTTTTGCGTNCA-TTCAAGGGCTCCATAATAAGGTCAGACTATTT
genomic: TTAACAATGCTTCTCATCCATGGAGCAAAAATAAAATACTTATTTGGATGgtaagattcc ... tgcattgcagCTTTGCTTTTTGCGT-CAATTCAAGGGCTCCATAATAAGGTCAGACTATTT
aagtagtatacatccataatcacttggatttaaagtttctttaattgcattgcagCTTTGCTTTTTGCGTCAATTCAAGGGCTCCATAATAAGGTCAGACTATTTGGCACTGAGGTTGGGCTTTGTCACA
ctttaat putative branch site (score: 115)
atttaaagtttcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caccgaccataaagtcaaaagattcatgtatctgaagcctcaaataagtagtatacatccataatcacttggatttaaagtttctttaattgcattgcagCTTTGCTTTTTGCGTCAATTCAAGGGCTCCATAATAAGGTCAGACTATTTGGCACTGAGGTTGGGCTTTGTCACA
- ccgacca
- - - - - - - - - - -attcatg
- - - - - - - - - - - - - - - -ctgaagc
- - - - - - - - - - - - - - - - - - - - caaataag
- - - - - - - - - - - - - - - - - - - - - - - - - - - acatcca