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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtcaactcaacctttacatactgtaatgtacttgtgcgcctggcctgtttggttcgtggcgcatcggatagtgggttcttggcgatgcatttttcatgtaaatcagtcacagctacttcatttcatgttaacccggtcgtaacgatcgacggtccgctcctttgctggtacttcgcagGTTCCTGGAACATGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAGATCCCCGCGGTGATCAGCCGCTTCAGGGCTTTCCATGAGGCGTTCTTGG

Basic information

species Zea mays
transcript GRMZM2G088064_T02
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G088064_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os10g25130.1 (Oryza sativa), 3'ss of exon 14
gtgagtcaactcaacctttacatactgtaatgtacttgtgcgcctggcctgtttggttcgtggcgcatcggatagtgggttcttggcgatgcatttttcatgtaaatcagtcacagctacttcatttcatgttaacccggtcgtaacgatcgacggtccgctcctttgctggtacttcgcagGTTCCTGGAACATGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAGATCCCCGCGGTGATCAGCCGCTTCAGGGCTTTCCATGAGGCGTTCTTGG
                                                                        |    | | ||| |   |  |      ||   || || || ||   |||| ||||  ||  |   |  | |||  |||     ||   |  |||      |||| |  |||||||||| |||||||||||||||||||| |||||||| ||||| || |||||||||||| | |||  |||||||| ||| ||||||||||  ||| |||
-----------------------------------------------------------------------ctgaaagctactttgaagtttacgaacaat---aagcactc-catgcactttattttttggcatatccatggtactgatt--ttgttttcctcttc-----tactccaaagGTTCCTGGCACATGGCACATCAGATGCACAATCCTGCCACAGGAGGAGAAGATCCCCGCGATCATCTCCCGCTTCAAGGCATTCCATGAGGGCTTCATGG

upper sequence: GRMZM2G088064_T02 (Zea mays), 3'ss of exon 6
lower sequence: AT1G72330.3 (Arabidopsis thaliana), 3'ss of exon 13
gtgagtcaactcaacctttacatactgtaatgtacttgtgcgcctggcctgtttggttcgtggcgcatcggatagtgggttcttggcgatgcatttttcatgtaaatcagtcacagctacttcatttcatgttaacccggtcgtaac-gatcgacggtccgctcctttgctggtacttcgcagGTTCCTGGAACATGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAGATCCCCGCGGTGATCAGCCGCTTCAGGGCTTTCCATGAGGCGTTCTTGG
                                                                                          | |   |  |   |||||  ||| | ||  || | |   |   ||   | ||| |   ||   | ||        ||   ||    ||   |||||||||||||||||||| | |||||||| || || || || ||||||||||| || ||| |  | |  ||  | |  |  |||||  ||   ||| |||
------------------------------------------------------------------------------------------gtaaaatataaccaaatct-tcataact--ttaaatgtcttacaaaaggatcgaacttgaataatgggttttggattcattgtggttt---agGTTCCTGGAACATGGCACTTTAGATGCACAATACTTCCACAAGAAGACAAGATTCCAGCGATAGTGAATCGTCTGACAGAGTTCCACAAGAGCTTCATGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47962226|gb|CN844935.1|CN844935
EST:     TCCTTGAATCGACTGGAATCGTCGTGGTCCCTGGATCTGGATTTGGTCAA                         GTTCCTGGAACATGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAG
genomic: TCCTTGAATCGACTGGAATCGTCGTGGTCCCTGGATCTGGATTTGGTCAAgtgagtcaac ... tacttcgcagGTTCCTGGAACATGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAG
EST: gi|56538354|gb|CX054063.1|CX054063
EST:     TCCTTGAATCAACTGGAATCGTCGTGGTCCCTGGATCTGGATTTGGTCAA                         GTTCCTGGAACATGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAG
genomic: TCCTTGAATCGACTGGAATCGTCGTGGTCCCTGGATCTGGATTTGGTCAAgtgagtcaac ... tacttcgcagGTTCCTGGAACATGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAG
EST: gi|12972731|gb|BG268128.1|BG268128
EST:     TCCTTGAATCGACTGGAATCGTCGTGGTCCCTGGATCTGGATTTGGTCAA                         GTTCCTGGAACATGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAG
genomic: TCCTTGAATCGACTGGAATCGTCGTGGTCCCTGGATCTGGATTTGGTCAAgtgagtcaac ... tacttcgcagGTTCCTGGAACATGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAG
EST: gi|67018293|gb|CO447042.1|CO447042
EST:     TCCTTGAATCGACTGGAATCGTCGTGGTCCCTGGATCTGGATTTGGTCAA                         GTTCCTGGAACATGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAG
genomic: TCCTTGAATCGACTGGAATCGTCGTGGTCCCTGGATCTGGATTTGGTCAAgtgagtcaac ... tacttcgcagGTTCCTGGAACATGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAG
EST: gi|440653|gb|T14674.1|T14674
EST:     TCCCTGGATCTGGATTTGGTCAA                         GTTCCTGGAACATGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAG
genomic: TCCCTGGATCTGGATTTGGTCAAgtgagtcaac ... tacttcgcagGTTCCTGGAACATGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAG
EST: gi|67014982|gb|CO443731.1|CO443731
EST:     TCCTTGAATCGACTGGAATCGTCGTGGTCCCTGGATCTGGATTTGGTCAA                         GTTCCTGGAACATGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAG
genomic: TCCTTGAATCGACTGGAATCGTCGTGGTCCCTGGATCTGGATTTGGTCAAgtgagtcaac ... tacttcgcagGTTCCTGGAACATGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAG
EST: gi|24769730|gb|CA404859.1|CA404859
EST:     TCCTTGAATCGACTGGAATCGTCGTGGTCCCTGGATCTGGATTTGGTCAA                         GTTCCTGGAACATGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAG
genomic: TCCTTGAATCGACTGGAATCGTCGTGGTCCCTGGATCTGGATTTGGTCAAgtgagtcaac ... tacttcgcagGTTCCTGGAACATGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAG
EST: gi|6538906|gb|AW225045.1|AW225045
EST:     TCCTTGAATCGACTGGAATCGTCGTGGTCCCTGGATCTGGATTTGGTCAA                         GTTCCTGGAACATGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAG
genomic: TCCTTGAATCGACTGGAATCGTCGTGGTCCCTGGATCTGGATTTGGTCAAgtgagtcaac ... tacttcgcagGTTCCTGGAACATGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAG
EST: gi|62550335|gb|DN830755.1|DN830755
EST:     CCTTGAATCGACTGGAATCGTCGTGGTCCCTGGGATCTGGATTTGGTCAA                         GTTCCTGGAACATGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAG
genomic: CCTTGAATCGACTGGAATCGTCGTGGTCCCTGG-ATCTGGATTTGGTCAAgtgagtcaac ... tacttcgcagGTTCCTGGAACATGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAG
EST: gi|37392291|gb|CF633394.1|CF633394
EST:     TCCTTGAATCAACTGGAATCGTCGTGGTCCCTGGATCTGGATTTGGTCAA                         GTTCCTGGAACATGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAG
genomic: TCCTTGAATCGACTGGAATCGTCGTGGTCCCTGGATCTGGATTTGGTCAAgtgagtcaac ... tacttcgcagGTTCCTGGAACATGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAG
EST: gi|113701726|gb|EE679230.1|EE679230
EST:     TCCTTGAATCAACTGGAATCGTCGTGGTCCCTGGATCTGGATTTGGTCAA                         GTTCCTGGAACATGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAG
genomic: TCCTTGAATCGACTGGAATCGTCGTGGTCCCTGGATCTGGATTTGGTCAAgtgagtcaac ... tacttcgcagGTTCCTGGAACATGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAG
EST: gi|5456278|gb|AI833968.1|AI833968
EST:     TCCTTGAATCAACTGGAATCGTCGTGGTCCCTGGATCTGGATTTGGTCAA                         GTTCCTGGAACATGGCACATCAGATGCACGATCCT-CCGCAGGAAGACAAG
genomic: TCCTTGAATCGACTGGAATCGTCGTGGTCCCTGGATCTGGATTTGGTCAAgtgagtcaac ... tacttcgcagGTTCCTGGAACATGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAG
EST: gi|44681923|gb|CK786971.1|CK786971
EST:     TCCTTGAATCGACTGGAATCGTCGTGGTCCCTGGATCTAGATTTGGTCAA                         GTTCCTGGAACATGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAG
genomic: TCCTTGAATCGACTGGAATCGTCGTGGTCCCTGGATCTGGATTTGGTCAAgtgagtcaac ... tacttcgcagGTTCCTGGAACATGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAG
EST: gi|32856051|gb|CD995732.1|CD995732
EST:     TCCTTGAATCAACTGGAATCGTCGTGGTCCCTGGATCTGGATTTGGTCAA                         GTTCCTGGAACATGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAG
genomic: TCCTTGAATCGACTGGAATCGTCGTGGTCCCTGGATCTGGATTTGGTCAAgtgagtcaac ... tacttcgcagGTTCCTGGAACATGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAG
EST: gi|58029866|gb|CX725293.1|CX725293
EST:     TCCTTGAATCGACTGGAATCGTCGTGGTCCCTGGATCTGGATTTGGTCAA                         GTTCCTGGAACATGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAG
genomic: TCCTTGAATCGACTGGAATCGTCGTGGTCCCTGGATCTGGATTTGGTCAAgtgagtcaac ... tacttcgcagGTTCCTGGAACATGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAG
EST: gi|61236601|gb|DN586349.1|DN586349
EST:     TCCTTGAATCGACTGGAATCGTCGTGGTCCCTGGATCTGGATTTGGTCAA                         GTTCCTGGAACACGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAG
genomic: TCCTTGAATCGACTGGAATCGTCGTGGTCCCTGGATCTGGATTTGGTCAAgtgagtcaac ... tacttcgcagGTTCCTGGAACATGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAG
EST: gi|211264932|gb|FL212893.1|FL212893
EST:     TCCTTGAATCAACTGGAATCGTCGTGGTCCCTGGATCTGGATTTCGTCAA                         GTTCCTGGAACATGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAG
genomic: TCCTTGAATCGACTGGAATCGTCGTGGTCCCTGGATCTGGATTTGGTCAAgtgagtcaac ... tacttcgcagGTTCCTGGAACATGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAG
EST: gi|32838607|gb|CD978285.1|CD978285
EST:     TCCTTGAATCAACTGGAATCGTCGTGGTCCCTGGATCTGGATTTGGTCAA                         GTTCCTGGAACATGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAG
genomic: TCCTTGAATCGACTGGAATCGTCGTGGTCCCTGGATCTGGATTTGGTCAAgtgagtcaac ... tacttcgcagGTTCCTGGAACATGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAG
EST: gi|211267357|gb|FL212899.1|FL212899
EST:     TCCTTGAATCAACTGGAATCGTCGTGGTCCCTGGATCTGGATTTCGTCAA                         GTTCCTGGAACATGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAG
genomic: TCCTTGAATCGACTGGAATCGTCGTGGTCCCTGGATCTGGATTTGGTCAAgtgagtcaac ... tacttcgcagGTTCCTGGAACATGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAG
EST: gi|31355085|gb|CD439442.1|CD439442
EST:     TCCTTGAATCGACTGGAATCGTCGTGGTCCCTGGATCTGGATTTGGTCAA                         GTTCCTGGAACATGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAG
genomic: TCCTTGAATCGACTGGAATCGTCGTGGTCCCTGGATCTGGATTTGGTCAAgtgagtcaac ... tacttcgcagGTTCCTGGAACATGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAG
EST: gi|32936760|gb|CF041579.1|CF041579
EST:     TCCTTGAATCAACTGGAATCGTCGTGGTCCCTGGATCTGGATTTGGTCAA                         GTTCCTGGAACATGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAG
genomic: TCCTTGAATCGACTGGAATCGTCGTGGTCCCTGGATCTGGATTTGGTCAAgtgagtcaac ... tacttcgcagGTTCCTGGAACATGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAG
EST: gi|32907809|gb|CF012622.1|CF012622
EST:     TCCTTGAATCAACTGGAATCGTCGTGGTCCCTGGATCTGGATTTGGTCAA                         GTTCCTGGAACATGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAG
genomic: TCCTTGAATCGACTGGAATCGTCGTGGTCCCTGGATCTGGATTTGGTCAAgtgagtcaac ... tacttcgcagGTTCCTGGAACATGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAG
EST: gi|45213756|gb|CK849996.1|CK849996
EST:     TCCTTGAATCGACTGGAATCGTCGTGGTCCCTGGATCTGGATTTGGTCAA                         GTTCCTGGAACATGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAG
genomic: TCCTTGAATCGACTGGAATCGTCGTGGTCCCTGGATCTGGATTTGGTCAAgtgagtcaac ... tacttcgcagGTTCCTGGAACATGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAG
EST: gi|31359639|gb|CD443996.1|CD443996
EST:     TCCTTGAATCGACTGGAATCGTCGTGGTCCCTGGATCTGGATTTGGTCAA                         GTTCCTGGAACATGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAG
genomic: TCCTTGAATCGACTGGAATCGTCGTGGTCCCTGGATCTGGATTTGGTCAAgtgagtcaac ... tacttcgcagGTTCCTGGAACATGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAG
EST: gi|37381380|gb|CF627571.1|CF627571
EST:     TCCTTGAATCAACTGGAATCGTCGTGGTCCCTGGATCTGGATTTGGTCAA                         GTTCCTGGAACATGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAG
genomic: TCCTTGAATCGACTGGAATCGTCGTGGTCCCTGGATCTGGATTTGGTCAAgtgagtcaac ... tacttcgcagGTTCCTGGAACATGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAG
EST: gi|67024661|gb|CO453410.1|CO453410
EST:     TCCTTGAATCGACTGGAATCGTCGTGGTCCCTGGATCTGGATTTGGTCAA                         GTTCCTGGAACATGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAG
genomic: TCCTTGAATCGACTGGAATCGTCGTGGTCCCTGGATCTGGATTTGGTCAAgtgagtcaac ... tacttcgcagGTTCCTGGAACATGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAG
EST: gi|37384618|gb|CF629399.1|CF629399
EST:     TCCTTGAATCAACTGGAATCGTCGTGGTCCCTGGATCTGGATTTGGTCAA                         GTTCCTGGAACATGGTACATCAGATGCACGATCCTGCCGCAGGAAGACAAG
genomic: TCCTTGAATCGACTGGAATCGTCGTGGTCCCTGGATCTGGATTTGGTCAAgtgagtcaac ... tacttcgcagGTTCCTGGAACATGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgttaacccggtcgtaacgatcgacggtccgctcctttgctggtacttcgcagGTTCCTGGAACATGGCACATCAGATGCACGATCCTGCCGCAGGAAGACAAGATCCCCGCGGTGATCAGCCGCTTCAGGGCTTTCCATGAGGCGTTCTTGG
             tcgtaac  putative branch site (score: 2)