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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaatagagcctgtctcatcaataggcactagatagtccttttgctgcacctcattgaatggcctgtcgtcttgattatcctgtccccaatggtttttcagGGTGAAGAACTGTGCAAATTCTATTCTCGTTACGGCATCTGCAAGTTCGGCGCCAACTGTAAATTCGACCATCCTACAGTGGTTGCTCCAATGGTCTATG

Basic information

species Zea mays
transcript GRMZM2G087032_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G087032_T04 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os01g68860.3 (Oryza sativa), 3'ss of exon 5
-aaatagagcctgtctcatcaataggcactagatagtccttttgctgcacctcattgaatggcctg-tcgtct-tgattatcctgtccccaatggtttttcagGGTGAAGAACTGTGCAAATTCTATTCTCGTTACGGCATCTGCAAGTTCGGCGCCAACTGTAAATTCGACCATCCTACAGTGGTTGCTCCAATGGTC-TATG
    || |   |         ||   |||| || |   | |||| |    |  ||   |     || | | || |||     ||||  | |   | ||||||||| |||||||||||||| ||||||||||| || |||||||||||||||||||| || || ||||| |||||||| ||  ||| | |||||||||   | | 
actgtatatattagtatgaagattaacacttgaaaaaacctttgattgttcctataacacctaatgattgactatgacacggctgtttcga---gattttcagGGAGAAGAACTGTGCAAGTTCTATTCTCGCTATGGCATCTGCAAGTTCGGCGCGAATTGCAAATTTGACCATCCAACGATGGCTCCTCCAATGGGAGTGT-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13315839|gb|BG410391.1|BG410391
EST:     TGCCCCCTCCAGATTGTGTCTTAAGTCCAATGGGTCTTCCACTACGTCCA                         GGTGAAGAGCTGTGCGAATTCTATTCTCGTTACGGCATCTGCAAGTTCGGC
genomic: TGCCCCCTCCAGATTGTGTCTTAAGTCCAATGGGTCTTCCACTACGTCCAgtaagtcatt ... ggtttttcagGGTGAAGAACTGTGCAAATTCTATTCTCGTTACGGCATCTGCAAGTTCGGC
EST: gi|194717083|gb|FK934236.1|FK934236
EST:     TGCCCCCTCCAGATTGTGTCTTAAGTCCAATGGGTCTTCCACTACGTCCA                         GGTGAAGAACTGTGCAAATTCTATTCTCGTTACGGCATCTGCAAGTTCGGC
genomic: TGCCCCCTCCAGATTGTGTCTTAAGTCCAATGGGTCTTCCACTACGTCCAgtaagtcatt ... ggtttttcagGGTGAAGAACTGTGCAAATTCTATTCTCGTTACGGCATCTGCAAGTTCGGC
EST: gi|67040014|gb|CO466269.1|CO466269
EST:     TGCCCCCTCCGGATTGTGTCTTAAGTCCAATGGGTCTTCCACTACGTCCA                         GGTGAAGAACTGTGCAAATTCTATTCTCGTTACCGCATCTGCAAGTTCGGC
genomic: TGCCCCCTCCAGATTGTGTCTTAAGTCCAATGGGTCTTCCACTACGTCCAgtaagtcatt ... ggtttttcagGGTGAAGAACTGTGCAAATTCTATTCTCGTTACGGCATCTGCAAGTTCGGC
EST: gi|33097685|gb|CF057645.1|CF057645
EST:     TGCCCCCTCCAGATTGTGTCTTAAGTCCAATGGGTCTTCCACTACGTCCA                         GGTGAAGAACTGTGCAAATTCTATTCTCGTTACGGCATCTGCAAGTTCGGC
genomic: TGCCCCCTCCAGATTGTGTCTTAAGTCCAATGGGTCTTCCACTACGTCCAgtaagtcatt ... ggtttttcagGGTGAAGAACTGTGCAAATTCTATTCTCGTTACGGCATCTGCAAGTTCGGC
EST: gi|32920637|gb|CF025449.1|CF025449
EST:     TGCCCCCTCCGGATTGTGTCTTAAGTCCAATGGGTCTTCCACTACGTCCA                         GGTGAAGAACTGTGCAAATTCTATTCTCGTTACGGCATCTGCAAGTTCGGC
genomic: TGCCCCCTCCAGATTGTGTCTTAAGTCCAATGGGTCTTCCACTACGTCCAgtaagtcatt ... ggtttttcagGGTGAAGAACTGTGCAAATTCTATTCTCGTTACGGCATCTGCAAGTTCGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcacctcattgaatggcctgtcgtcttgattatcctgtccccaatggtttttcagGGTGAAGAACTGTGCAAATTCTATTCTCGTTACGGCATCTGCAAGTTCGGCGCCAACTGTAAATTCGACCATCCTACAGTGGTTGCTCCAATGGTCTATG
                       tcttgat  putative branch site (score: 4)
                                               tttttc  putative PPT
                         ttgattat  TA-rich tract