1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagtatcacttgatcttttaacttgtcgatagcatagaatacaatcattcagtgatgtttcttatggattctctaatagtcaaataattgctcctaattgactcatttcatttcttgtagTGGCAAAACTGTTACTATTTCTCTCTGGAATGATCTTGCTACTACGACTGGCCAAGAGCTTTTGGACATGGTTGACAGTTCGCCTGTTGTTGCGATAAAG
species | Zea mays |
transcript | GRMZM2G086934_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATTGACAACGAGACAATACCGAAGCGTGACATTGTTGTAGCAGATGACTC TGGCAAAACTGTTACTATTTCTCTCTGGAATGATCTTGCTACTACGACTGGEST: gi|67023291|gb|CO452040.1|CO452040
genomic: ATTGACAACGAGACAATACCGAAGCGTGATATTGTTGTAGCAGATGACTCgtaagtatca ... tttcttgtagTGGCAAAACTGTTACTATTTCTCTCTGGAATGATCTTGCTACTACGACTGG
EST: TTGACAACGAGGAC-ATACCGAAGCGTGACATTGTTGTAGCAGATGACTC TGGCAAAACTGTTACTATTTCTCTCTGGAATGATCTTGCTACTACGACTGGEST: gi|61118644|gb|DN559605.1|DN559605
genomic: TTGACAACGA-GACAATACCGAAGCGTGATATTGTTGTAGCAGATGACTCgtaagtatca ... tttcttgtagTGGCAAAACTGTTACTATTTCTCTCTGGAATGATCTTGCTACTACGACTGG
EST: ATTGACAACGAGACAATACCGAAGCGTGACATTGTTGTAGCAGACGACTC TGGCAAAACTGTTACTATTTCTCTCTGGAATGATCTTGCTACTACGACTGGEST: gi|32825102|gb|CD964824.1|CD964824
genomic: ATTGACAACGAGACAATACCGAAGCGTGATATTGTTGTAGCAGATGACTCgtaagtatca ... tttcttgtagTGGCAAAACTGTTACTATTTCTCTCTGGAATGATCTTGCTACTACGACTGG
EST: ATTGACAACGAGACAATACCGAAGCGTGACATTGTTGTAGCAGATGACTC TGGCAAAACTGTTACTATTTCTCTCTGGAATGATCTTGCTACTACGACTGGEST: gi|32943914|gb|CF048733.1|CF048733
genomic: ATTGACAACGAGACAATACCGAAGCGTGATATTGTTGTAGCAGATGACTCgtaagtatca ... tttcttgtagTGGCAAAACTGTTACTATTTCTCTCTGGAATGATCTTGCTACTACGACTGG
EST: ATTGACAACGAGACAATACCGAAGCGTGACATTGTTGTAGCAGATGACTC TGGCAAAACTGTTACTATTTCTCTCTGGAATGATCTTGCTACTACGACTGGEST: gi|18659482|gb|BM500361.1|BM500361
genomic: ATTGACAACGAGACAATACCGAAGCGTGATATTGTTGTAGCAGATGACTCgtaagtatca ... tttcttgtagTGGCAAAACTGTTACTATTTCTCTCTGGAATGATCTTGCTACTACGACTGG
EST: ATTGACAACGAGACAATACCGAAGCGTGACATTGTTGTAGCAGATGACTC TGGNAAAACTGTTACTATTTCTCTCTGGAATGATCTTGCTACTACGACTGGEST: gi|61118643|gb|DN559604.1|DN559604
genomic: ATTGACAACGAGACAATACCGAAGCGTGATATTGTTGTAGCAGATGACTCgtaagtatca ... tttcttgtagTGGCAAAACTGTTACTATTTCTCTCTGGAATGATCTTGCTACTACGACTGG
EST: ATTGACAACGAGACAATACCGAAGCGTGACATTGTTGTAGCAGACGACTC TGGCAAAACTGTTACTATTTCTCTCTGGAATGATCTTGCTACTACGACTGGEST: gi|32914104|gb|CF018916.1|CF018916
genomic: ATTGACAACGAGACAATACCGAAGCGTGATATTGTTGTAGCAGATGACTCgtaagtatca ... tttcttgtagTGGCAAAACTGTTACTATTTCTCTCTGGAATGATCTTGCTACTACGACTGG
EST: ATTGACAACGAGACAATACCGAAGCGTGACATTGTTGTAGCAGATGACTC TGGCAAAACTGTTACTATTTCTCTCTGGAATGATCTTGCTACTACGACTGG
genomic: ATTGACAACGAGACAATACCGAAGCGTGATATTGTTGTAGCAGATGACTCgtaagtatca ... tttcttgtagTGGCAAAACTGTTACTATTTCTCTCTGGAATGATCTTGCTACTACGACTGG
ggattctctaatagtcaaataattgctcctaattgactcatttcatttcttgtagTGGCAAAACTGTTACTATTTCTCTCTGGAATGATCTTGCTACTACGACTGGCCAAGAGCTTTTGGACATGGTTGACAGTTCGCCTGTTGTTGCGATAAAG
ctcatttcatttctt CT-rich tract
taatagtcaaataatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtatcacttgatcttttaacttgtcgatagcatagaatacaatcattcagtgatgtttcttatggattctctaatagtcaaataattgctcctaattgactcatttcatttcttgtagTGGCAAAACTGTTACTATTTCTCTCTGGAATGATCTTGCTACTACGACTGGCCAAGAGCTTTTGGACATGGTTGACAGTTCGCCTGTTGTTGCGATAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT