1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...attagctgccatggtaggtccttcatgatgtagggtttcatgattcatgattttggtatttgattttgttgtcatggcttccaatttcttgtgtatctagGTGGGAAACGTCTTGTTCCTGTTGGCCTTGGAGACGATGATCAGTGCATTGAGGATGATTTCACTGCATG
species | Zea mays |
transcript | GRMZM2G086489_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTTGCAAAGGTGGTAGATGAGCTAGTAGAGGAGCAGG GTGGGAAACGTCTTGTTCCTGTTGGCCTTGGAGACGATGATCAGTGCATTGEST: gi|21809491|gb|BQ667809.1|BQ667809
genomic: GTTGCAAAGGTGGTAGATGAGCTAGTAGAGGAGCAGGgtaagtaatt ... gtgtatctagGTGGGAAACGTCTTGTTCCTGTTGGCCTTGGAGACGATGATCAGTGCATTG
EST: GTTGCAAAGGTGGTAGATGAGCTAGTAGAGGAGCAGG GTGGGAAACGTCTTGTTCCTGTTGGCCTTGGAGACGATGATCAGCGCATTGEST: gi|211095653|gb|FK967022.1|FK967022
genomic: GTTGCAAAGGTGGTAGATGAGCTAGTAGAGGAGCAGGgtaagtaatt ... gtgtatctagGTGGGAAACGTCTTGTTCCTGTTGGCCTTGGAGACGATGATCAGTGCATTG
EST: GTTGCAAAGGTGGTAGATGAGCTAGTAGAAGAGCAGG GTGGGGAAACGTCTTGTTCCTGTTGGCCT-GGNAGACGATGATCAGTGCATEST: gi|148940766|gb|EC885587.2|EC885587
genomic: GTTGCAAAGGTGGTAGATGAGCTAGTAGAGGAGCAGGgtaagtaatt ... gtgtatctagGTGGG-AAACGTCTTGTTCCTGTTGGCCTTGG-AGACGATGATCAGTGCAT
EST: GTTGCAAAGGTGGTAGATGAGCTAGTAGAGGAGCAGG GTGGGAAACGTCTTGTTCCTGTTGGCCTTGGAGACGATGATCAGTGCATTGEST: gi|148970820|gb|EE021584.2|EE021584
genomic: GTTGCAAAGGTGGTAGATGAGCTAGTAGAGGAGCAGGgtaagtaatt ... gtgtatctagGTGGGAAACGTCTTGTTCCTGTTGGCCTTGGAGACGATGATCAGTGCATTG
EST: GTTGCAAAGGTGGTAGATGAGCTAGTAGAGGAGCAGG GTGGGAAACGTCTTGTTCCTGTTGGCCTTGGAGACGATGATCAGTGCATTG
genomic: GTTGCAAAGGTGGTAGATGAGCTAGTAGAGGAGCAGGgtaagtaatt ... gtgtatctagGTGGGAAACGTCTTGTTCCTGTTGGCCTTGGAGACGATGATCAGTGCATTG
catgattttggtatttgattttgttgtcatggcttccaatttcttgtgtatctagGTGGGAAACGTCTTGTTCCTGTTGGCCTTGGAGACGATGATCAGTGCATTGAGGATGATTTCACTGCATG
atttgat putative branch site (score: 1023)
tttcttgt putative PPT
tatttgattttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attagctgccatggtaggtccttcatgatgtagggtttcatgattcatgattttggtatttgattttgttgtcatggcttccaatttcttgtgtatctagGTGGGAAACGTCTTGTTCCTGTTGGCCTTGGAGACGATGATCAGTGCATTGAGGATGATTTCACTGCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- -agctgcc
- - - - - - - - - - cttcatg
- - - - - - - - - - - - - - - - - -tttcatg
- - - - - - - - - - - - - - - - - - - - - attcatg
- - - - - - - - - - - - - - - - - - - - - - - - - ttttggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcttcca