1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaatttcttaatgttctcatcttagtcttctttctgaaaagtgtcatgtcattataaaaaaaactgcatgctattatcttattctttttgtctgtatgcagATTAATCCAAAAGCTGCAGAGTCTCTAGCAGATCCTTCTGAATATCCAAATCTATTTGAAGACTGGCAGGTTGCTCTAACTGTAGAAAAAAGTGTTGCGT
species | Zea mays |
transcript | GRMZM2G086015_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTAGCAAAGTACCAGAGATAGTGGCAATTTGGAGAGACGACCTGAGTAAA ATTAATCCAAAAGCTGCAGAGTCTCTAGCAGATCCTTCTGAATATCCAAATEST: gi|160481598|gb|EY254430.1|EY254430
genomic: CTAGCAAAGTACCAGAGATATTGGCAATTTGGAGAGACGACCTGAGTAAAgtaatttctt ... ctgtatgcagATTAATCCAAAAGCTGCAGAGTCTCTAGCAGATCCTTCTGAATATCCAAAT
EST: CTAGCAAAGTACCAGAGATAGTGGCAATTTGGAGAGACGACCTGAGTAAA ATTAATCCAAAAGCTGCAGAGTCTCTAGCAGATCCTTCTGAATATCCAAATEST: gi|67024352|gb|CO453101.1|CO453101
genomic: CTAGCAAAGTACCAGAGATATTGGCAATTTGGAGAGACGACCTGAGTAAAgtaatttctt ... ctgtatgcagATTAATCCAAAAGCTGCAGAGTCTCTAGCAGATCCTTCTGAATATCCAAAT
EST: TAGCAAAGTACCAGAGATAGTGGCAATTTGGAGAGACGACCTTGAGTAAA -TTAATCCAAAAGCTGCAGAGTCTCTAGCAGATCCTTCTGAATATCCAAA
genomic: TAGCAAAGTACCAGAGATATTGGCAATTTGGAGAGACGACCT-GAGTAAAgtaatttctt ... ctgtatgcagATTAATCCAAAAGCTGCAGAGTCTCTAGCAGATCCTTCTGAATATCCAAA
tgtcattataaaaaaaactgcatgctattatcttattctttttgtctgtatgcagATTAATCCAAAAGCTGCAGAGTCTCTAGCAGATCCTTCTGAATATCCAAATCTATTTGAAGACTGGCAGGTTGCTCTAACTGTAGAAAAAAGTGTTGCGT
tcttattctttttgtc CT-rich tract
tattatcttattcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttcttaatgttctcatcttagtcttctttctgaaaagtgtcatgtcattataaaaaaaactgcatgctattatcttattctttttgtctgtatgcagATTAATCCAAAAGCTGCAGAGTCTCTAGCAGATCCTTCTGAATATCCAAATCTATTTGAAGACTGGCAGGTTGCTCTAACTGTAGAAAAAAGTGTTGCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA