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gtgcgtgagatacattaaacctaatttctgaaatgtttttatcatggcaccttttttacaacattttcataaccattgctttgattaaatgaaagtctgaatgctgtttgtttatggaaaaaaaagatgtatttacttgtaaataaatccatggttgcataccttattcagttaagtttacatagATTTAGGACTGAGGCAACCTCGGCTGGAAGGAGAAGAATACTTGGCTGTTGTAGATGAATTCATGGAGGCTGTCCATGCACGTTGGCCTAAAGCAGTTGT
species | Zea mays |
transcript | GRMZM2G085747_T04 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AATGCTTGATGTGGGAACAAATAATGAAAAGCTTCTGGAGGACAAGCTAT ATTTAGGACTGAGGCAACCTCGGCTGGAAGGAGAAGAATACTTGGCTGTTGEST: gi|33094812|gb|CF054806.1|CF054806
genomic: AATGCTTGATGTGGGAACAAATAATGAAAAGCTTCTGGAGGACAAGCTATgtgcgtgaga ... gtttacatagATTTAGGACTGAGGCAACCTCGGCTGGAAGGAGAAGAATACTTGGCTGTTG
EST: AATGCTTGATGTGGGAACAAATAATGAAAAGCTTCTGGAGGACAAGCTAT ATTTAGGACTGAGGCAACCTCGGCTGGAAGGAGAAGAATACTTGGCTGTTGEST: gi|32838032|gb|CD977710.1|CD977710
genomic: AATGCTTGATGTGGGAACAAATAATGAAAAGCTTCTGGAGGACAAGCTATgtgcgtgaga ... gtttacatagATTTAGGACTGAGGCAACCTCGGCTGGAAGGAGAAGAATACTTGGCTGTTG
EST: AATGCTTGATGTGGGAACAAATAATGAAAAGCTTCTGGAGGACAAGCTAT ATTTAGGACTGAGGCAEST: gi|32836374|gb|CD976052.1|CD976052
genomic: AATGCTTGATGTGGGAACAAATAATGAAAAGCTTCTGGAGGACAAGCTATgtgcgtgaga ... gtttacatagATTTAGGACTGAGGCA
EST: AATGCTTGATGTGGGAACAAATAATGAAAAGCTTCTGGAGGACAAGCTAT ATTTAGGACTGAGGCAEST: gi|71437509|gb|DR818559.1|DR818559
genomic: AATGCTTGATGTGGGAACAAATAATGAAAAGCTTCTGGAGGACAAGCTATgtgcgtgaga ... gtttacatagATTTAGGACTGAGGCA
EST: AATGCTTGATGTGGGAACAAATAATGAAAAGCTTCTGGAGGACAAGCTAT ATTTAGGACTGAGGCAACCTCGGCTGGGAGGAGAAGAATACTTGGCTG
genomic: AATGCTTGATGTGGGAACAAATAATGAAAAGCTTCTGGAGGACAAGCTATgtgcgtgaga ... gtttacatagATTTAGGACTGAGGCAACCTCGGCTGGAAGGAGAAGAATACTTGGCTG
atttacttgtaaataaatccatggttgcataccttattcagttaagtttacatagATTTAGGACTGAGGCAACCTCGGCTGGAAGGAGAAGAATACTTGGCTGTTGTAGATGAATTCATGGAGGCTGTCCATGCACGTTGGCCTAAAGCAGTTGT
ttgtaaataaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgtgagatacattaaacctaatttctgaaatgtttttatcatggcaccttttttacaacattttcataaccattgctttgattaaatgaaagtctgaatgctgtttgtttatggaaaaaaaagatgtatttacttgtaaataaatccatggttgcataccttattcagttaagtttacatagATTTAGGACTGAGGCAACCTCGGCTGGAAGGAGAAGAATACTTGGCTGTTGTAGATGAATTCATGGAGGCTGTCCATGCACGTTGGCCTAAAGCAGTTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG