1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atattatggctactcatacttttttgtgcgatatgagctgaaagtcatggaaattaaaatacattgttacaagatctgatgaaaatgcaacattgttcagGTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATGGGCTGACACAATGAGTGATGTGAACAAGAAGCACCAGAAAGAATTTGAA
species | Zea mays |
transcript | GRMZM2G085670_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTG GTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATGEST: gi|50325881|gb|CO521007.1|CO521007
genomic: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTGgtttgtatgc ... cattgttcagGTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATG
EST: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTG GTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATGEST: gi|101390708|gb|EB817288.1|EB817288
genomic: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTGgtttgtatgc ... cattgttcagGTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATG
EST: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTG GTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATGEST: gi|32927905|gb|CF032717.1|CF032717
genomic: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTGgtttgtatgc ... cattgttcagGTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATG
EST: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTG GTTGGGAACATCAGATAGCCEST: gi|32927397|gb|CF032209.1|CF032209
genomic: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTGgtttgtatgc ... cattgttcagGTTGGGAACATCAGATAGCC
EST: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTG GTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATGEST: gi|71423346|gb|DR806010.1|DR806010
genomic: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTGgtttgtatgc ... cattgttcagGTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATG
EST: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTG GTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATGEST: gi|32934734|gb|CF039546.1|CF039546
genomic: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTGgtttgtatgc ... cattgttcagGTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATG
EST: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTG GTTGGGAACCATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATEST: gi|71764777|gb|DR962714.1|DR962714
genomic: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTGgtttgtatgc ... cattgttcagGTTGGGAA-CATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAAT
EST: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTG GTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATGEST: gi|76936648|gb|DV174824.1|DV174824
genomic: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTGgtttgtatgc ... cattgttcagGTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATG
EST: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTG GTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATGEST: gi|149000178|gb|EE037317.2|EE037317
genomic: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTGgtttgtatgc ... cattgttcagGTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATG
EST: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTG GTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATGEST: gi|32927878|gb|CF032690.1|CF032690
genomic: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTGgtttgtatgc ... cattgttcagGTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATG
EST: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTG GTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATGEST: gi|211512612|gb|FL228205.1|FL228205
genomic: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTGgtttgtatgc ... cattgttcagGTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATG
EST: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTG GTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATGEST: gi|32933246|gb|CF038058.1|CF038058
genomic: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTGgtttgtatgc ... cattgttcagGTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATG
EST: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTG GTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATGEST: gi|89247571|gb|DY619357.1|DY619357
genomic: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTGgtttgtatgc ... cattgttcagGTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATG
EST: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTG GTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATGEST: gi|32928013|gb|CF032825.1|CF032825
genomic: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTGgtttgtatgc ... cattgttcagGTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATG
EST: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTG GTTGGGA-CATCAGATAEST: gi|32927819|gb|CF032631.1|CF032631
genomic: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTGgtttgtatgc ... cattgttcagGTTGGGAACATCAGATA
EST: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTG GTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATGEST: gi|32927866|gb|CF032678.1|CF032678
genomic: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTGgtttgtatgc ... cattgttcagGTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATG
EST: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTG GTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATGEST: gi|31360706|gb|CD445063.1|CD445063
genomic: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTGgtttgtatgc ... cattgttcagGTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATG
EST: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTG GTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAGTGEST: gi|32927641|gb|CF032453.1|CF032453
genomic: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTGgtttgtatgc ... cattgttcagGTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATG
EST: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTG GTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATGEST: gi|32927565|gb|CF032377.1|CF032377
genomic: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTGgtttgtatgc ... cattgttcagGTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATG
EST: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTG GTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATGEST: gi|101398140|gb|EB820944.1|EB820944
genomic: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTGgtttgtatgc ... cattgttcagGTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATG
EST: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTG GTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATGEST: gi|78090434|gb|DV518808.1|DV518808
genomic: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTGgtttgtatgc ... cattgttcagGTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATG
EST: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTG GTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATGEST: gi|211226565|gb|FL435978.1|FL435978
genomic: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTGgtttgtatgc ... cattgttcagGTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATG
EST: GATCAGCTAAACAACATGATAGAGATCTTATCTGACTG GTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATGEST: gi|78090435|gb|DV518809.1|DV518809
genomic: GATCAGCTAAACAACATGATAGAGATCTTATCTGACTGgtttgtatgc ... cattgttcagGTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATG
EST: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTG GTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATG
genomic: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTGgtttgtatgc ... cattgttcagGTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATG
catggaaattaaaatacattgttacaagatctgatgaaaatgcaacattgttcagGTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATGGGCTGACACAATGAGTGATGTGAACAAGAAGCACCAGAAAGAATTTGAA
atctgat putative branch site (score: 93)
aaattaaaatacattg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atattatggctactcatacttttttgtgcgatatgagctgaaagtcatggaaattaaaatacattgttacaagatctgatgaaaatgcaacattgttcagGTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATGGGCTGACACAATGAGTGATGTGAACAAGAAGCACCAGAAAGAATTTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA