1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cacttgaatccaaattttagttttggtgatctacatcttgctgcatacatgacatttggaactcttggagcaggattcttacccaccattttctttgaagGCCTTTCTGAGCAAGTAAATGTGCAAATGGTCACTTCTTCAGAACAGGGTAACCACCTCTCCAGGCCATCATGTACATGTACCCTTGTGGAGTGCATACA
species | Zea mays |
transcript | GRMZM2G085602_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCCAGCAAGCGACTGTGGTTAGACAATACCTACAGCAGGAAGTTGGCAAG GCCTTTCTGAGCAAGTAAATGTGCAAATGGTCACTTCTTCAGAACAGGGTAEST: gi|211193237|gb|FL445828.1|FL445828
genomic: TCCAGCAAGCGACTGTGGTTAGACAATACCTACAGCAGGAAGTTGGCAAGgtaaatatcg ... ttctttgaagGCCTTTCTGAGCAAGTAAATGTGCAAATGGTCACTTCTTCAGAACAGGGTA
EST: TCCAGCAAGCGACTGTGGTTAGACAATACCTACAGCAGGAAGTTGGCAAG GCCTTTCTGAGCAAGTAAATGTGCAAATGGTCACTCTTCTTCAGAACAGGGEST: gi|91874350|gb|EB404307.1|EB404307
genomic: TCCAGCAAGCGACTGTGGTTAGACAATACCTACAGCAGGAAGTTGGCAAGgtaaatatcg ... ttctttgaagGCCTTTCTGAGCAAGTAAATGTGCAAATGGTCACT-T-CTTCAGAACAGGG
EST: TCCAGCAAGCGACTGTGGTTAGACAATACCTACAGCAGGAAGTTGGCAAG GCCTTTCTGAGCAAGTAAATGTGCAAATGGTCACTTCTTCAGAACAGGGTA
genomic: TCCAGCAAGCGACTGTGGTTAGACAATACCTACAGCAGGAAGTTGGCAAGgtaaatatcg ... ttctttgaagGCCTTTCTGAGCAAGTAAATGTGCAAATGGTCACTTCTTCAGAACAGGGTA
tacatgacatttggaactcttggagcaggattcttacccaccattttctttgaagGCCTTTCTGAGCAAGTAAATGTGCAAATGGTCACTTCTTCAGAACAGGGTAACCACCTCTCCAGGCCATCATGTACATGTACCCTTGTGGAGTGCATACA
ttcttac putative branch site (score: 16)
ttcttacccaccattt CT-rich tract
attttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacttgaatccaaattttagttttggtgatctacatcttgctgcatacatgacatttggaactcttggagcaggattcttacccaccattttctttgaagGCCTTTCTGAGCAAGTAAATGTGCAAATGGTCACTTCTTCAGAACAGGGTAACCACCTCTCCAGGCCATCATGTACATGTACCCTTGTGGAGTGCATACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - tgaatcc
- - - - - - - - - - - -tggtgat
- - - - - - - - - - - - - - - ctacatc
- - - - - - - - - - - - - - - - - - -ttgctgc
- - - - - - - - - - - - - - - - - - - - - - atacatg
- - - - - - - - - - - - - - - - - - - - - - - - - -acatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggagcag