1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtacgtacgtaatgcatggatgtaatttgtttgcctaggatatatatggtgtagtacttgctggttcatctttaattttgaggaaaatgttgagatcctatcctagactacatcatcgatcactaggatcgtcagcagagctagcatgttccctaatgaatgttaagagagatcggatcttctgtttcaacagCTCTATGCAGAATCACTCGCACGCTTTCAAGGAGGGTCCCCTTACATCTACCCTCTATACGGTCTGGGAGAGCTCCCTCAG
species | Zea mays |
transcript | GRMZM2G084440_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACGACAGCTACCTTGACGAGCCTGCAATCGACACTGTCAAGAGGATGAAG CTCTATGCAGAATCACTCGCACGCTTTCAAGGAGGGTCCCCTTACATCTACEST: gi|78108949|gb|DV527366.1|DV527366
genomic: ACGACAGCTACCTTGACGAGCCTGCAATCGACACTGTCAAGAGGATGAAGgtacgtacgt ... gtttcaacagCTCTATGCAGAATCACTCGCACGCTTTCAAGGAGGGTCCCCTTACATCTAC
EST: ACGACAGCTACCTTGACGAGCCTGCAATCGACACTGTCAAGAGGATGAAG CTCTATGCAGAATCACTCGCACGCTTTCAAGGAGGGTCCCCTTACATCTACEST: gi|6827020|gb|AW330663.1|AW330663
genomic: ACGACAGCTACCTTGACGAGCCTGCAATCGACACTGTCAAGAGGATGAAGgtacgtacgt ... gtttcaacagCTCTATGCAGAATCACTCGCACGCTTTCAAGGAGGGTCCCCTTACATCTAC
EST: ACGACAGCTACCTGGACGAGCCTGCAATCGACACTGTCAAGAGGATGAAG CTCTATGCAGAATCACTCGCACGCTTTCAAGGAEST: gi|50324747|gb|CO519873.1|CO519873
genomic: ACGACAGCTACCTTGACGAGCCTGCAATCGACACTGTCAAGAGGATGAAGgtacgtacgt ... gtttcaacagCTCTATGCAGAATCACTCGCACGCTTTCAAGGA
EST: ACGACAGCTACCTTGACGAGCCTGCAATCGACACTGTCAAGAGGATGAAG CTCTATGCAGAATCACTCGCACGCTTTCAAGGAGGGTCCCCTTACATCTACEST: gi|78179007|gb|DV549380.1|DV549380
genomic: ACGACAGCTACCTTGACGAGCCTGCAATCGACACTGTCAAGAGGATGAAGgtacgtacgt ... gtttcaacagCTCTATGCAGAATCACTCGCACGCTTTCAAGGAGGGTCCCCTTACATCTAC
EST: ACGACAGCTACCTGGACGAGCCTGCAATCGACACTGTCAAGAGGATGAAG CTCTATGCAGAATCACTCGCACGCTTTCAGAG-AGGGTCCCCTTACATCTAEST: gi|78093304|gb|DV521678.1|DV521678
genomic: ACGACAGCTACCTTGACGAGCCTGCAATCGACACTGTCAAGAGGATGAAGgtacgtacgt ... gtttcaacagCTCTATGCAGAATCACTCGCACGCTTTCA-AGGAGGGTCCCCTTACATCTA
EST: ACGACAGCTACCTTGACGAGCCTGCAATCGACACTGTCAAGAGGATGAAG CTCTATGCAGAATCACTCGCACGCTTTCAAGGAGGGTCCCCTTACATCTAC
genomic: ACGACAGCTACCTTGACGAGCCTGCAATCGACACTGTCAAGAGGATGAAGgtacgtacgt ... gtttcaacagCTCTATGCAGAATCACTCGCACGCTTTCAAGGAGGGTCCCCTTACATCTAC
agctagcatgttccctaatgaatgttaagagagatcggatcttctgtttcaacagCTCTATGCAGAATCACTCGCACGCTTTCAAGGAGGGTCCCCTTACATCTACCCTCTATACGGTCTGGGAGAGCTCCCTCAG
ccctaat putative branch site (score: 313)
tcttctgtttc putative PPT
taatgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtacgtaatgcatggatgtaatttgtttgcctaggatatatatggtgtagtacttgctggttcatctttaattttgaggaaaatgttgagatcctatcctagactacatcatcgatcactaggatcgtcagcagagctagcatgttccctaatgaatgttaagagagatcggatcttctgtttcaacagCTCTATGCAGAATCACTCGCACGCTTTCAAGGAGGGTCCCCTTACATCTACCCTCTATACGGTCTGGGAGAGCTCCCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT