1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtcagctaaacttccattctaaagcttcattttgatcatgtatgcaccttatccataaacatactttgtttctgcagCAACTGTAATCAGAGATGAAGTTGGGCTGTCACTTGACAAGGCCGACAAATCAGTTCTTGGAACAGCTGCAAAGGTTGTCCTTACGAAAGAGTCGACAAC
species | Zea mays |
transcript | GRMZM2G083716_T05 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGGAGAGCGGAAGACTCAGTACTTGGATGATATTGCCATCCTTACTGGAG CAACTGTAATCAGAGATGAAGTTGGGCTATCACTTGACAAGGCCGACAAGTEST: gi|60343427|gb|DN210400.1|DN210400
genomic: TGGAGAGCGCAAGACTCAGTACTTGGATGATATTGCCATCCTTACTGGAGgtcagctaaa ... gtttctgcagCAACTGTAATCAGAGATGAAGTTGGGCTGTCACTTGACAAGGCCGACAAAT
EST: TGGAGAGCGGAAGACTCAGTACTTGGATGATATTGCCATCCTTACTGGAG CAACTGTAATCAGAGATGAAGTTGGGCTATCACTTGACAAGGCCGACAAGTEST: gi|211420404|gb|FL361813.1|FL361813
genomic: TGGAGAGCGCAAGACTCAGTACTTGGATGATATTGCCATCCTTACTGGAGgtcagctaaa ... gtttctgcagCAACTGTAATCAGAGATGAAGTTGGGCTGTCACTTGACAAGGCCGACAAAT
EST: TGGAGAGCGCAAGACTCAGTACTTGGATGATATTGCCATCCTTACTGGAG CAACTGTAATCAGAGATGAAGTTGGGCTGTCACTTGACAGGGCCGACAATTEST: gi|32823357|gb|CD963079.1|CD963079
genomic: TGGAGAGCGCAAGACTCAGTACTTGGATGATATTGCCATCCTTACTGGAGgtcagctaaa ... gtttctgcagCAACTGTAATCAGAGATGAAGTTGGGCTGTCACTTGACAAGGCCGACAAAT
EST: TGGAGAGCGGAAGACTCAGTACTTGGATGATATTGCCTTCCTTACTGGAG CAACTGTAATCAGAGATGAAGTTGGGCTATCACTTGACAAGGCCGACAAGTEST: gi|211390788|gb|FL311858.1|FL311858
genomic: TGGAGAGCGCAAGACTCAGTACTTGGATGATATTGCCATCCTTACTGGAGgtcagctaaa ... gtttctgcagCAACTGTAATCAGAGATGAAGTTGGGCTGTCACTTGACAAGGCCGACAAAT
EST: TGGAGAGCGCAAGACTCAGTACTTGGATGATATTGCCATCCTTACTGGAG CAACTGTAATCNGAGATGAAGTTGGGCTGTCACTTGACAAGGCCGACAATTEST: gi|51592649|gb|CV071795.1|CV071795
genomic: TGGAGAGCGCAAGACTCAGTACTTGGATGATATTGCCATCCTTACTGGAGgtcagctaaa ... gtttctgcagCAACTGTAATCAGAGATGAAGTTGGGCTGTCACTTGACAAGGCCGACAAAT
EST: TGGAGAGCGCAAGACTCAGTACTTGGATGATATTGCCATCCTTACTGGAG CAACTGTAATCAGAGATGAAGTTGGGCTATCACTTGACAAGGCCGACAAGTEST: gi|32935129|gb|CF039941.1|CF039941
genomic: TGGAGAGCGCAAGACTCAGTACTTGGATGATATTGCCATCCTTACTGGAGgtcagctaaa ... gtttctgcagCAACTGTAATCAGAGATGAAGTTGGGCTGTCACTTGACAAGGCCGACAAAT
EST: TGGAGAGCGGAAGACTCAGTACTTGGATGATATTGCCATCCTTACTGGAG CAACTGTAATCAGAGATGAAGTTGGGCTATCACTTGACATGGCCGACAAGT
genomic: TGGAGAGCGCAAGACTCAGTACTTGGATGATATTGCCATCCTTACTGGAGgtcagctaaa ... gtttctgcagCAACTGTAATCAGAGATGAAGTTGGGCTGTCACTTGACAAGGCCGACAAAT
agcttcattttgatcatgtatgcaccttatccataaacatactttgtttctgcagCAACTGTAATCAGAGATGAAGTTGGGCTGTCACTTGACAAGGCCGACAAATCAGTTCTTGGAACAGCTGCAAAGGTTGTCCTTACGAAAGAGTCGACAAC
ttttgat putative branch site (score: 4)
ctttgtttct putative PPT
ataaacata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagctaaacttccattctaaagcttcattttgatcatgtatgcaccttatccataaacatactttgtttctgcagCAACTGTAATCAGAGATGAAGTTGGGCTGTCACTTGACAAGGCCGACAAATCAGTTCTTGGAACAGCTGCAAAGGTTGTCCTTACGAAAGAGTCGACAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG