1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaacttgttggcataacctgttgtttcttggaattttagcgtgtagcaccatagtttgcatacgttttaagccacaattgaactatgagttagcggaaacgtgctaaggaaaaaccaataccatgcagagacgtcgtgtgaaagttgcataaagtcaacagtctcatttcctgtcatggttttgtagGCGTCACAGGATCTGTCTTCACTCAAGGACATAGCTGGAGAGACTGGAAAGAAGCTGACATCTTTCGCCTCCAATTTCATCAGCGACCTGGACAGAATCC
species | Zea mays |
transcript | GRMZM2G083546_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTAACCTGGACCTAAGCGCTGCAGATTTCATCAACAGAATATCTTTCCAG GCGTCACAGGATCTGTCTTCACTCAAGGACATAGCTGGAGAGACTGGAAAGEST: gi|32939942|gb|CF044761.1|CF044761
genomic: CTAACCTGGACCTAAGCGCTGCAGATCTCATCAACAGAATATCTTTCCAGgtaacttgtt ... ggttttgtagGCGTCACAGGATCTGTCTTCACTCAAGGACATAGCTGGAGAGACTGGAAAG
EST: CTAACCTGGACCTAAGCGCTGCAGATCTCATCAACAGAATATCTTTCCAG GCGTCACAGGATCTGTCTTCACTCAAGGACATAGCTGGAGAGACTGGAAAGEST: gi|18162325|gb|BM332164.1|BM332164
genomic: CTAACCTGGACCTAAGCGCTGCAGATCTCATCAACAGAATATCTTTCCAGgtaacttgtt ... ggttttgtagGCGTCACAGGATCTGTCTTCACTCAAGGACATAGCTGGAGAGACTGGAAAG
EST: CTAACCTGGACCTAAGCGCTGCAGATCTCATCAACAGAATATCTTTCCAG GCGTCACAGGATCTGTCTTCACTCAAGGACATAGCTGGAGAGACTGGAAAGEST: gi|37379430|gb|CF626459.1|CF626459
genomic: CTAACCTGGACCTAAGCGCTGCAGATCTCATCAACAGAATATCTTTCCAGgtaacttgtt ... ggttttgtagGCGTCACAGGATCTGTCTTCACTCAAGGACATAGCTGGAGAGACTGGAAAG
EST: CTAACCTGGACCTAAGCGCTGCAGATCTCATCAACAGAATATCTTTCCAG GCGTCACAGGATCTGTCTTCACTCAAGGACATAGCTGGAGAGACTGGAAAGEST: gi|78092043|gb|DV520417.1|DV520417
genomic: CTAACCTGGACCTAAGCGCTGCAGATCTCATCAACAGAATATCTTTCCAGgtaacttgtt ... ggttttgtagGCGTCACAGGATCTGTCTTCACTCAAGGACATAGCTGGAGAGACTGGAAAG
EST: CTAACCTGGACCTAAGCGCTGCAGATCTCATCAACAGAATATCTTTCCAG GCGTCACAGGATCTGTCTTCACTCAAGGACATAGCTGGAGAGACTGGAAAGEST: gi|110209090|gb|EC890987.1|EC890987
genomic: CTAACCTGGACCTAAGCGCTGCAGATCTCATCAACAGAATATCTTTCCAGgtaacttgtt ... ggttttgtagGCGTCACAGGATCTGTCTTCACTCAAGGACATAGCTGGAGAGACTGGAAAG
EST: CTAACCTGGACCTAAGCGCTGCAGATCTCATCAACAGAATATCTTTCCAG GCGTCACAGGATCTGTCTTCACTCAAGGACATAGCTGGAGAGACTGGAAAGEST: gi|88746794|gb|DY530935.1|DY530935
genomic: CTAACCTGGACCTAAGCGCTGCAGATCTCATCAACAGAATATCTTTCCAGgtaacttgtt ... ggttttgtagGCGTCACAGGATCTGTCTTCACTCAAGGACATAGCTGGAGAGACTGGAAAG
EST: CTAACCTGGACCTAAGCGCTGCAGATCTCATCAACAGAATATCTTTCCAG GCGTCACAGGATCTGTCTTCACTCAAGGACATAGCTGGAGAGACTGGAAAGEST: gi|76924552|gb|DV170001.1|DV170001
genomic: CTAACCTGGACCTAAGCGCTGCAGATCTCATCAACAGAATATCTTTCCAGgtaacttgtt ... ggttttgtagGCGTCACAGGATCTGTCTTCACTCAAGGACATAGCTGGAGAGACTGGAAAG
EST: CTAACCTGGACCTAAGCGCTGCAGATCTCATCAACAGAATATCTTTCCAG GCGTCACAGGATCTGTCTTCACTCAAGGACATAGCTGGAGAGACTGGAAAGEST: gi|149086706|gb|EE176245.2|EE176245
genomic: CTAACCTGGACCTAAGCGCTGCAGATCTCATCAACAGAATATCTTTCCAGgtaacttgtt ... ggttttgtagGCGTCACAGGATCTGTCTTCACTCAAGGACATAGCTGGAGAGACTGGAAAG
EST: CTAACCTGGACCTAAGCGCTGCAGATCTCATCAACAGAATATCTTTCCAG GCGTCACAGGATCTGTCTTCACTCAAGGACATAGCTGGAGAGACTGGAAAGEST: gi|60358412|gb|DN225385.1|DN225385
genomic: CTAACCTGGACCTAAGCGCTGCAGATCTCATCAACAGAATATCTTTCCAGgtaacttgtt ... ggttttgtagGCGTCACAGGATCTGTCTTCACTCAAGGACATAGCTGGAGAGACTGGAAAG
EST: CTAACCTGGACCTAAGCGCTGCAGATCTCATCAACAGAATATCTTTCCAG GCGTCACAGGATCTGTCTTCACTCAAGGACATAGCTGGAGAGACTGGAAAGEST: gi|6022125|gb|AW067053.1|AW067053
genomic: CTAACCTGGACCTAAGCGCTGCAGATCTCATCAACAGAATATCTTTCCAGgtaacttgtt ... ggttttgtagGCGTCACAGGATCTGTCTTCACTCAAGGACATAGCTGGAGAGACTGGAAAG
EST: CTAACCTGGACCTAAGCGCTGCAGATCTCATCAACAGAATATCTTTCCAG GCGTCACAGGATCTGTCTTCACTCAAGGACATAGCTGGAGAGACTGGAAAGEST: gi|109179344|gb|EC379938.1|EC379938
genomic: CTAACCTGGACCTAAGCGCTGCAGATCTCATCAACAGAATATCTTTCCAGgtaacttgtt ... ggttttgtagGCGTCACAGGATCTGTCTTCACTCAAGGACATAGCTGGAGAGACTGGAAAG
EST: CTAACCTGGACCTAAGCGCTGCAGATCTCATCAACAGAATATCTTTCCAG GCGTCACAGGATCTGTCTTCACTCAAGGACATAGCTGGAGAGACTGGAAAGEST: gi|37381689|gb|CF627745.1|CF627745
genomic: CTAACCTGGACCTAAGCGCTGCAGATCTCATCAACAGAATATCTTTCCAGgtaacttgtt ... ggttttgtagGCGTCACAGGATCTGTCTTCACTCAAGGACATAGCTGGAGAGACTGGAAAG
EST: CTAACCTGGACCTAAGCGCTGCAGATCTCATCAACAGAATATCTTTCCAG GCGTCACAGGATCTGTCTTCACTCAAGGACATAGCTGGAGAGACTGGAAAGEST: gi|60358232|gb|DN225205.1|DN225205
genomic: CTAACCTGGACCTAAGCGCTGCAGATCTCATCAACAGAATATCTTTCCAGgtaacttgtt ... ggttttgtagGCGTCACAGGATCTGTCTTCACTCAAGGACATAGCTGGAGAGACTGGAAAG
EST: CTAACCTGGACCTAAGCGCTGCAGATCTCATCAACAGAATATCTTTCCAG GCGTCACAGGATCTGTCTTCACTCAAGGACATAGCTGGAGAGACTGGAAAGEST: gi|74237116|gb|DT645030.1|DT645030
genomic: CTAACCTGGACCTAAGCGCTGCAGATCTCATCAACAGAATATCTTTCCAGgtaacttgtt ... ggttttgtagGCGTCACAGGATCTGTCTTCACTCAAGGACATAGCTGGAGAGACTGGAAAG
EST: CTAACCTGGACCTAAGCGCTGCAGATCTCATCAACAGAATATCTTTCCAG GCGTCACAGGATCTGTCTTCACTCAAGGACATAGCTGGAGAGACTGGAAAGEST: gi|89757145|gb|DY686866.1|DY686866
genomic: CTAACCTGGACCTAAGCGCTGCAGATCTCATCAACAGAATATCTTTCCAGgtaacttgtt ... ggttttgtagGCGTCACAGGATCTGTCTTCACTCAAGGACATAGCTGGAGAGACTGGAAAG
EST: CTAACCTGGACCTAAGCGCTGCAGATCTCATCAACAGAATATCTTTCCAG GCGTCACAGGATCTGTCTTCACTCAAGGACATAGCTGGAGAGACTGGAAAGEST: gi|60342316|gb|DN209289.1|DN209289
genomic: CTAACCTGGACCTAAGCGCTGCAGATCTCATCAACAGAATATCTTTCCAGgtaacttgtt ... ggttttgtagGCGTCACAGGATCTGTCTTCACTCAAGGACATAGCTGGAGAGACTGGAAAG
EST: CTAACCTGGACCTAAGCGCTGCAGATCTCATCAACAGAATATCTTTCCAG GCGTCACAGGATCTGTCTTCACTCAAGGACATAGCTGGAGAGACTGGAAAGEST: gi|60348664|gb|DN215637.1|DN215637
genomic: CTAACCTGGACCTAAGCGCTGCAGATCTCATCAACAGAATATCTTTCCAGgtaacttgtt ... ggttttgtagGCGTCACAGGATCTGTCTTCACTCAAGGACATAGCTGGAGAGACTGGAAAG
EST: CTAACCTGGACCTAAGCGCTGCAGATCTCATCAACAGAATATCTTTCCAG GCGTCACAGGATCTGTCTTCACTCAAGGACATAGCTGGAGAGACTGGAAAGEST: gi|148940300|gb|EC885085.2|EC885085
genomic: CTAACCTGGACCTAAGCGCTGCAGATCTCATCAACAGAATATCTTTCCAGgtaacttgtt ... ggttttgtagGCGTCACAGGATCTGTCTTCACTCAAGGACATAGCTGGAGAGACTGGAAAG
EST: CTAACCTGGACCTAAGCGCTGCAGATCTCATCAACAGAATATCTTTCCAG GCGTCACAGGATCTGTCTTCACTCAAGGACATAGCTGGAGAGACTGGAAAGEST: gi|78024255|gb|DV492642.1|DV492642
genomic: CTAACCTGGACCTAAGCGCTGCAGATCTCATCAACAGAATATCTTTCCAGgtaacttgtt ... ggttttgtagGCGTCACAGGATCTGTCTTCACTCAAGGACATAGCTGGAGAGACTGGAAAG
EST: CTAACCTGGACCTAAGCGCTGCAGATCTCATCAACAGAATATCTTTCCAG GCGTCACAGGATCTGTCTTCACTCAAGGACATAGCTGGAGAGACTGGAAAGEST: gi|60355340|gb|DN222313.1|DN222313
genomic: CTAACCTGGACCTAAGCGCTGCAGATCTCATCAACAGAATATCTTTCCAGgtaacttgtt ... ggttttgtagGCGTCACAGGATCTGTCTTCACTCAAGGACATAGCTGGAGAGACTGGAAAG
EST: CTAACCTGGACCTAAGCGCTGCAGATCTCATCAACAGAATATCTTTCCAG GCGTCACAGGATCTGTCTTCACTCAAGGACATAGCTGGAGAGACTGGAAAG
genomic: CTAACCTGGACCTAAGCGCTGCAGATCTCATCAACAGAATATCTTTCCAGgtaacttgtt ... ggttttgtagGCGTCACAGGATCTGTCTTCACTCAAGGACATAGCTGGAGAGACTGGAAAG
gtcgtgtgaaagttgcataaagtcaacagtctcatttcctgtcatggttttgtagGCGTCACAGGATCTGTCTTCACTCAAGGACATAGCTGGAGAGACTGGAAAGAAGCTGACATCTTTCGCCTCCAATTTCATCAGCGACCTGGACAGAATCC
ataaagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacttgttggcataacctgttgtttcttggaattttagcgtgtagcaccatagtttgcatacgttttaagccacaattgaactatgagttagcggaaacgtgctaaggaaaaaccaataccatgcagagacgtcgtgtgaaagttgcataaagtcaacagtctcatttcctgtcatggttttgtagGCGTCACAGGATCTGTCTTCACTCAAGGACATAGCTGGAGAGACTGGAAAGAAGCTGACATCTTTCGCCTCCAATTTCATCAGCGACCTGGACAGAATCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA