1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgagtttttttgcttttcgtatgtgttctgaactgaataggttatctgaattttctgtgcagtattgctcattgttgaaaatttcttttagactagagagagttattgtatgtgttatattttctccaaaattaaggattgtatggtcatcgacctttttgatagccattacttactgatgttatgtttgcagGCTGATGGTTCTGAAAATCAGCTCGAAGTTTGAACTGAGAAGATTCTGCCGTACTACTGGGGCTGTTGCAATT
species | Zea mays |
transcript | GRMZM2G083095_T03 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGTGGAGCTGCAGTTGGTGACATGGCGCTACATTTTTGTGAACGTTACAA GCTGATGGTTCTGAAAATCAGCTCGAAGTTTGAACTGAGAAGATTCTGCCGEST: gi|211512561|gb|FL110022.1|FL110022
genomic: AGTGGAGCTGCAGTTGGTGACATGGCGCTACATTTTTGTGAACGTTACAAgtgagttttt ... atgtttgcagGCTGATGGTTCTGAAAATCAGCTCGAAGTTTGAACTGAGAAGATTCTGCCG
EST: AGTGGAGCTGCAGTTGGTGACATGGCGCTACATTTTTGTGAACGTTACAA GCTGATGGTTCTGAAAATCAGCTCGAAGTTTGAACTGAGAAEST: gi|60396537|gb|DN229406.1|DN229406
genomic: AGTGGAGCTGCAGTTGGTGACATGGCGCTACATTTTTGTGAACGTTACAAgtgagttttt ... atgtttgcagGCTGATGGTTCTGAAAATCAGCTCGAAGTTTGAACTGAGAA
EST: AGTGGAGCTGCAGTTGGTGACATGGCGCTACATTTTTGTGAACGTTACAA GCTGATGGTTCTGAAAATCAGCTCGAAGTTTGAACTGAGAAGATTCTGCCGEST: gi|60358557|gb|DN225530.1|DN225530
genomic: AGTGGAGCTGCAGTTGGTGACATGGCGCTACATTTTTGTGAACGTTACAAgtgagttttt ... atgtttgcagGCTGATGGTTCTGAAAATCAGCTCGAAGTTTGAACTGAGAAGATTCTGCCG
EST: AGTGGAGCTGCAGTTGGTGACATGGCGCTACATTTTTGTGAACGTTACAA GCTGATGGTTCTGAAAATCATCTCGAAGTTTGAACTGAGAAGATTCTGCCCEST: gi|87157134|gb|DY401923.1|DY401923
genomic: AGTGGAGCTGCAGTTGGTGACATGGCGCTACATTTTTGTGAACGTTACAAgtgagttttt ... atgtttgcagGCTGATGGTTCTGAAAATCAGCTCGAAGTTTGAACTGAGAAGATTCTGCCG
EST: AGTGGAGCTGCAGTTGGTGACATGGCGCTACATTTTTGTGAACGTTACAA GCTGATGGTTCTGAAAATCAGCTCGAAGTTTGAACTGAGAAGATTCTGCCG
genomic: AGTGGAGCTGCAGTTGGTGACATGGCGCTACATTTTTGTGAACGTTACAAgtgagttttt ... atgtttgcagGCTGATGGTTCTGAAAATCAGCTCGAAGTTTGAACTGAGAAGATTCTGCCG
ttgtatggtcatcgacctttttgatagccattacttactgatgttatgtttgcagGCTGATGGTTCTGAAAATCAGCTCGAAGTTTGAACTGAGAAGATTCTGCCGTACTACTGGGGCTGTTGCAATT
tttttgata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtttttttgcttttcgtatgtgttctgaactgaataggttatctgaattttctgtgcagtattgctcattgttgaaaatttcttttagactagagagagttattgtatgtgttatattttctccaaaattaaggattgtatggtcatcgacctttttgatagccattacttactgatgttatgtttgcagGCTGATGGTTCTGAAAATCAGCTCGAAGTTTGAACTGAGAAGATTCTGCCGTACTACTGGGGCTGTTGCAATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT