Sequence
atgc intronic sequence ATGC exonic sequencegtatgtagattaaacaaaattgtttcatacttgtgcaaagttacatatatgttataactaaccataattaatcgagaactttgttatttcagGGCCTAGACACAATGGTCGGTGAGCATGGAGCACAATTGTCAGGAGGGCAAAAACAAAGAATTGCAATCACAAGGGCAATACTGAAAAACCCCAAGATCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G082385_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os05g47490.1 (Oryza sativa), 3'ss of exon 7
gtatgtagattaaacaaaattgtttcatacttgtgcaaagttacatatatgttataact----aacca--taattaatcgagaactttgttatttcagGGCCTAGACACAATGGTCGGTGAGCATGGAGCACAATTGTCAGGAGGGCAAAAACAAAGAATTGCAATCACAAGGGCAATACTGAAAAACCCCAAGATCT
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--gtatgaaagacacagaaatgcttca-acctgtgcgatttttttatcgtattgttatttgacaactaactaactaaccatctcttctgttttctcagGGCCTGGACACAATGGTTGGTGAACATGGAGCTCAGCTATCTGGAGGGCAAAAGCAAAGAATTGCTATCGCAAGAGCGATCCTTAAAAATCCCAAAATCT
upper sequence: GRMZM2G082385_T01 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA13G29380.1 (Glycine max), 3'ss of exon 6
-----------------gtatgtagattaaacaaaattgtttcatacttgtgcaaagttacatatatgttataactaaccataattaatcgagaactttgttatttcagGGCCTAGACACAATGGTCGGTGAGCATGGAGCACAATTGTCAGGAGGGCAAAAACAAAGAATTGCAATCACAAGGGCAATACTGAAAAACCCCAAGATCT
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gtatgacattcttttacacaactgaaccaaaccaagttttatgtttctctctcttttttttctttaagat-tatttgaagttaataaaattgtattattctgtttgtagGGAATTGACACAATGGTTGGAGGGCATGGAACTCAACTTTCTGGTGGGCAAAAACAAAGAATAGCAATTGCAAGGGCAATTTTGAAGAACCCAAGAATCC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aagttacatatatgttataactaaccataattaatcgagaactttgttatttcagGGCCTAGACACAATGGTCGGTGAGCATGGAGCACAATTGTCAGGAGGGCAAAAACAAAGAATTGCAATCACAAGGGCAATACTGAAAAACCCCAAGATCT
ctttgtt CT-rich tract
atatatgttataacta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgtagattaaacaaaattgtttcatacttgtgcaaagttacatatatgttataactaaccataattaatcgagaactttgttatttcagGGCCTAGACACAATGGTCGGTGAGCATGGAGCACAATTGTCAGGAGGGCAAAAACAAAGAATTGCAATCACAAGGGCAATACTGAAAAACCCCAAGATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA