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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caaacacattttaatttataccattctttattgaatgaggtgcagttttccatcttttgatgtctgtgaagttggtttttatttttaaatttaatggcagATTCTCAAAGCTATGGGATTCACGAGGACATCATCAGCTGCTCTAAAGCTTCTTATAAATGTTGGATACTTCCCTGTGCATGTCAATCTCGACCTTTTCA

Basic information

species Zea mays
transcript GRMZM2G082260_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G082260_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os01g62440.2 (Oryza sativa), 3'ss of exon 6
caaacacattt-taattta-taccattctttattgaatgaggtgcagttttccatcttttgatgtctgtgaagttggtttttattttta--aatttaatggcagATTCTCAAAGCTATGGGATTCACGAGGACATCATCAGCTGCTCTAAAGCTTCTTATAAATGTTGGATACTTCCCTGTGCATGTCAATCTCGACCTTTTCA
||||    ||| || | ||  |  |||||| |||||| ||  |      ||   | ||    |||   ||| |||    | | |  |||  ||| |||| |||||||||||| |||||||| ||  | | ||| |||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||| || |||| ||
caaatgtttttgtagtgtaacataattcttcattgaaggaaataa----ttaagttttcccttgtagctgatgtttacctgtgtgattattaatgtaattgcagATTCTCAAGGCTATGGGCTTTTCAAAGACTTCATCAGCTGCTCTAAAGATCCTTATAAATATTGGATACTTCCCTGTGCATGTCAATCTTGATCTTTACA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttccatcttttgatgtctgtgaagttggtttttatttttaaatttaatggcagATTCTCAAAGCTATGGGATTCACGAGGACATCATCAGCTGCTCTAAAGCTTCTTATAAATGTTGGATACTTCCCTGTGCATGTCAATCTCGACCTTTTCA
                                           atttaat  putative branch site (score: 4)
                     tgaagttggtttttat  TA-rich tract