1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ggaattgctagttctgtttcccccttagccatggaaatatatcattaatatttgatgtacaaatacataggttcatctgactaacaaaatctttttttagATATAACTACCGCAGCCGTTGCTAAACAAGCTTTGGAGGGACACTGCATATATGATGGTGGTTACT
species | Zea mays |
transcript | GRMZM2G082174_T05 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGCAATGTTTGAGAAGAATGGTGGAATGCAGGCTCTAATCCAATATCCAG ATATAACTACCGCAGCCGTTGCTAAACAAGCTTTGGAGGGACACTGCATATEST: gi|86470539|gb|DY236909.1|DY236909
genomic: TGCAATGTTTGAGAAGAATGGTGGAATGCAGGCTCTAATCCAATATCCAGgtatgtgctc ... ctttttttagATATAACTACCGCAGCCGTTGCTAAACAAGCTTTGGAGGGACACTGCATAT
EST: TGCAATGTTTGAGAAGAATGGTGGAATGCAGGCTCTAATCCAATATCCAG ATATAACTACCGCAGCCGTTGCTAAACAAGCTTTGGAGGGACACTGCATAT
genomic: TGCAATGTTTGAGAAGAATGGTGGAATGCAGGCTCTAATCCAATATCCAGgtatgtgctc ... ctttttttagATATAACTACCGCAGCCGTTGCTAAACAAGCTTTGGAGGGACACTGCATAT
taatatttgatgtacaaatacataggttcatctgactaacaaaatctttttttagATATAACTACCGCAGCCGTTGCTAAACAAGCTTTGGAGGGACACTGCATATATGATGGTGGTTACT
gactaac putative branch site (score: 1)
tcttttttt putative PPT
taacaaaatctttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggaattgctagttctgtttcccccttagccatggaaatatatcattaatatttgatgtacaaatacataggttcatctgactaacaaaatctttttttagATATAACTACCGCAGCCGTTGCTAAACAAGCTTTGGAGGGACACTGCATATATGATGGTGGTTACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG