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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttctccctccgcagacgcgcgcgtttacataattacatccagtgtttcagaaccggctgccccgttcggatcgaaccaaaaacgccgacgagattattcttgtctttgcagAGAATACTGGGCGTGCAGTACTCGGTTCCAGACTACGTCCACATATCTCCGGAATGCCAGGACCTAATCTCCAGGATCTTCGTCGCCAACCCGTCCACC

Basic information

species Zea mays
transcript GRMZM2G081915_T02
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G081915_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os03g41460.1 (Oryza sativa), 3'ss of exon 5
gttctccctccgcagacgcgcgcgtttacataatta-catccagtgtttcagaaccggctgccccgttcggatcgaaccaaaaacgccgacgagattattcttgtctttgcagAGAATACTGGGCGTGCAGTACTCGGTTCCAGACTACGTCCACATATCTCCGGAATGCCAGGACCTAATCTCCAGGATCTTCGTCGCCAACCCGTCCACC
                       |||| |||      ||||||   |  | |   |       |    |   |   |  | |||  | ||   ||| ||  |  | || |||||||||| |||| |||||||||||  ||||||| || |||||||||||||| || ||||  || || ||  | ||||| || || ||||||||  |||| 
-----------------------gtttccattgcggtcatccaacatcacggtctcaaaatttcataaccattttgattacaaaaactgatc-gatgatcttcattttcgcagAGAATATTGGGTGTGCAGTACTCTATTCCAGATTATGTCCACATATCTCCAGAGTGCCGAGATCTTATTGCGAGGATTTTTGTGGCCAACCCAGCCACT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149112537|gb|EE295397.2|EE295397
EST:     ATCCATTCGAGGACCCAGACGAGCCTAAGAATTTCAGGAAGACGATCCAG                         AAGA-TACTGGGCGTGCAGTACTCGGTTCCAGACTA
genomic: ATCCATTCGAGGACCCAGACGAGCCTAAGAATTTCAGGAAGACGATCCAGgttctccctc ... gtctttgcagA-GAATACTGGGCGTGCAGTACTCGGTTCCAGACTA
EST: gi|78080573|gb|DV508985.1|DV508985
EST:     ATCCATTCGAGGACCCAGACGAGCCTAAGAATTTCAGGGAGACGATCCAG                         AGAATACTGGGCGTGCAGTACTCGGTTCCAGACTACGTCCACATATCTCCC
genomic: ATCCATTCGAGGACCCAGACGAGCCTAAGAATTTCAGGAAGACGATCCAGgttctccctc ... gtctttgcagAGAATACTGGGCGTGCAGTACTCGGTTCCAGACTACGTCCACATATCTCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgccccgttcggatcgaaccaaaaacgccgacgagattattcttgtctttgcagAGAATACTGGGCGTGCAGTACTCGGTTCCAGACTACGTCCACATATCTCCGGAATGCCAGGACCTAATCTCCAGGATCTTCGTCGCCAACCCGTCCACC
                                     ttattcttgtcttt  CT-rich tract
                                    attattctt  TA-rich tract