1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagcattgttaatccaggcttcggggggagcttatgttttagctgtcgatagtactttcatttcatctgatcacgggtctacacttactgtctctgcatgcagTTCTTCATCGTGCTGTCGTGCCTGATCTCGGTCTCGGTAAACTTCAGCACTTTCCTTGTGATCGGGAAGACGTCGCCTGTAACCTACCAAGTTCTCGGCC
species | Zea mays |
transcript | GRMZM2G081848_T05 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACCAAAACGTCTTTGCTTTCGACTACACAACTCAAGTCCTG TTCTTCATCGTGCTGTCGTGCCTGATCTCGGTCTCGGTAAACTTCAGCACTEST: gi|31358400|gb|CD442757.1|CD442757
genomic: ACCAAAACGTCTTTGCTTTCGACTACACAACTCAAGTCCTGgtaagcattg ... ctgcatgcagTTCTTCATCGTGCTGTCGTGCCTGATCTCGGTCTCGGTAAACTTCAGCACT
EST: TTTTGACTAACCAAAACGTCTTTGCTTTCGACTACACAACTCAAGTCCTG TTCTTCATCGTGCTGTCGTGCCTGATCTCGGTCTCGGTAAACTTCAGCACTEST: gi|149105553|gb|EE291087.2|EE291087
genomic: TTTTGACTAACCAAAACGTCTTTGCTTTCGACTACACAACTCAAGTCCTGgtaagcattg ... ctgcatgcagTTCTTCATCGTGCTGTCGTGCCTGATCTCGGTCTCGGTAAACTTCAGCACT
EST: ACTCAAGTCCTG TTCTTCATCGTGCTGTCGTGCCTGATCTCGGTCTCGGTAAACTTCAGCACTEST: gi|149102836|gb|EE288178.2|EE288178
genomic: ACTCAAGTCCTGgtaagcattg ... ctgcatgcagTTCTTCATCGTGCTGTCGTGCCTGATCTCGGTCTCGGTAAACTTCAGCACT
EST: TTTGGACTAACCAAAACGTCTTTGCTTTCGACTACACAACTCAAGTCCTG TTCTTCATCGTGCTGTCGTGCCTGATCTCGGTCTCGGTAAACTTCAGCACTEST: gi|32842786|gb|CD982467.1|CD982467
genomic: TTTTGACTAACCAAAACGTCTTTGCTTTCGACTACACAACTCAAGTCCTGgtaagcattg ... ctgcatgcagTTCTTCATCGTGCTGTCGTGCCTGATCTCGGTCTCGGTAAACTTCAGCACT
EST: TTTTGACTAACCAAAACGTCTTTGCTTTCGACTACACAACTCAAGTCCTG TTCTTCATCGTGCTGTCGTGCCTGATCTCGGTCTCGGTAAACTTCAGCACT
genomic: TTTTGACTAACCAAAACGTCTTTGCTTTCGACTACACAACTCAAGTCCTGgtaagcattg ... ctgcatgcagTTCTTCATCGTGCTGTCGTGCCTGATCTCGGTCTCGGTAAACTTCAGCACT
atagtactttcatttcatctgatcacgggtctacacttactgtctctgcatgcagTTCTTCATCGTGCTGTCGTGCCTGATCTCGGTCTCGGTAAACTTCAGCACTTTCCTTGTGATCGGGAAGACGTCGCCTGTAACCTACCAAGTTCTCGGCC
cacttac putative branch site (score: 2)
ctgtctct CT-rich tract
tttcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcattgttaatccaggcttcggggggagcttatgttttagctgtcgatagtactttcatttcatctgatcacgggtctacacttactgtctctgcatgcagTTCTTCATCGTGCTGTCGTGCCTGATCTCGGTCTCGGTAAACTTCAGCACTTTCCTTGTGATCGGGAAGACGTCGCCTGTAACCTACCAAGTTCTCGGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA