Sequence
atgc intronic sequence ATGC exonic sequence...tcatcttacatccttgctagcacaagagtctatgaaatcctcgagaccattgctgtaattgtaaagttttattgggttgttctgaattctgtcctttcagGTTAAGATGGCTGTACAGTACATGCGGCGAATCATTCAGAAAAGAGCTAAGTTTGACATAATGGATCTAAATGTTTTAAGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G081642_T04 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os02g10440.1 (Oryza sativa), 3'ss of exon 6
tcatcttacatccttgctagcacaagagtctatgaaatcctcgagaccattgctgtaattgtaaagttttattgggttgtt--ctgaattctgtcctttcagGTTAAGATGGCTGTACAGTACATGCGGCGAATCATTCAGAAAAGAGCTAAGTTTGACATAATGGATCTAAATGTTTTAAGG
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--gttgtatgttcttactaacataagctcctttctaaccttagtgagcattgctgtatttgcattgttttaatcattttttttctgaaattcgtcgtttcagGTTAAGATGGCTGTTCAGTATATGAGAAAGATCATTCAGAAGAGAGCTAAGTTTGACATAATGGATCTTAATGTTTTACAG
upper sequence: GRMZM2G081642_T04 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA07G40050.1 (Glycine max), 3'ss of exon 7
tcatcttacatccttgctagcacaagagtctatgaaatc---ctcgagaccattgctgtaattgtaaagttttattgggttgttctgaattctgtcctttcagGTTAAGATGGCTGTACAGTACATGCGGCGAATCATTCAGAAAAGAGCTAAGTTTGACATAATGGATCTAAATGTTTTAAGG
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aaatccttcaagcaacatggaaataaaacctatagctgttaacttggattttctggtgtgtttattaagtcttat---attctgctggatttgcctcaattagGTTAAAATGGCTGTACAGTACATGCGGAGGGTTATTGAGAAGAAGGCAAAGTTTGATATTATGAATCTGAACTGTTTGCAG
upper sequence: GRMZM2G081642_T04 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA17G00770.1 (Glycine max), 3'ss of exon 7
tcatcttacatccttgctagcacaagagtctatgaaatc---ctcgagaccattgctgtaattgtaaagttttattgggttgttctgaattctgtcctttcagGTTAAGATGGCTGTACAGTACATGCGGCGAATCATTCAGAAAAGAGCTAAGTTTGACATAATGGATCTAAATGTTTTAAGG
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aaatccttcaagcaacatggaaataaaacctatagctgttaacttggattttctggtgtgtttattaagtcttgt---attctgctggatttgcctcaattagGTTAAAATGGCTGTACAGTACATGCGGCGGGTTATTGAGAAGAAGGCAAAGTTTGATATTATGAATCTGAACTGTTTGCAG
upper sequence: GRMZM2G081642_T04 (Zea mays), 3'ss of exon 6
lower sequence: AT4G17150.2 (Arabidopsis thaliana), 3'ss of exon 6
------tcatctta-catccttgctagcacaagagtctatgaaatcctcgagaccattgctgtaattgtaaagttttattgggttgttctgaattctgtcctt-tcagGTTAAGATGGCTGTACAGTACATGCGGCGAATCATTCAGAAAAGAGCTAAGTTTGACATAATGGATCTAAAT-GTTTTAAGG
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aagggtccatattagtctccttatc--cattacaatcaatggtagcgt----attctagacattttcttatgcttgcaatgaa--actttaactcctttttcaattagGTTAAAGTGGCTGTGCAGTACATGCGGCGTATAATTCAGAAAAAGGCGAAGTTTAATATTATGGATCTCAATTGTGTTAAG- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.accattgctgtaattgtaaagttttattgggttgttctgaattctgtcctttcagGTTAAGATGGCTGTACAGTACATGCGGCGAATCATTCAGAAAAGAGCTAAGTTTGACATAATGGATCTAAATGTTTTAAGG
ttctgtcctttc CT-rich tract
taattgtaaagtttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tcatcttacatccttgctagcacaagagtctatgaaatcctcgagaccattgctgtaattgtaaagttttattgggttgttctgaattctgtcctttcagGTTAAGATGGCTGTACAGTACATGCGGCGAATCATTCAGAAAAGAGCTAAGTTTGACATAATGGATCTAAATGTTTTAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT