1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...caacagaaaggcttctgcttatatttgaatgttattgttctcatatattaacatgatttagcagctacactgactcctttttgttttattccacctgaagCTCGGTACTGGTTTGAGTATCTTTATCTCAAAAAGGAATCCCTCACTGGTGACTTCGTTTGCCTTCCTTTCCTGTGGATATCTCCTGAGTTCATATCAAG
species | Zea mays |
transcript | GRMZM2G081188_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGGAGATGTCACTGCTAAAGGCGAATCTGTTGGGAACATTGCAGATCTG CTCGGTACTGGTTTGAGTATCTTTATCTCAAAAAGGAATCCCTCACTGGTGEST: gi|211421799|gb|FL427212.1|FL427212
genomic: TTGGAGATGTCACTGCTAAAGGCGAATCTGTTGGGAACATTGCAGATCTGgtaaaaatca ... ccacctgaagCTCGGTACTGGTTTGAGTATCTTTATCTCAAAAAGGAATCCCTCACTGGTG
EST: TTGGAGATGTCACTGCTAAAGGCGAATCTGTTGGGAACATTGCAGATCTG CTCGGTACTGGTTTGAGTATCTTTATCTCAAAAAGGAATCCCTCACTGGTGEST: gi|31353527|gb|CD437884.1|CD437884
genomic: TTGGAGATGTCACTGCTAAAGGCGAATCTGTTGGGAACATTGCAGATCTGgtaaaaatca ... ccacctgaagCTCGGTACTGGTTTGAGTATCTTTATCTCAAAAAGGAATCCCTCACTGGTG
EST: TTGGAGATGTCACTGCTAAAGGCGAATCTGTTGGGAACATTGCAGATCTG CTCGGTACTGGTTTGAGTATCTTTATCTCAAAAAGGAATCCCTCACTGGTG
genomic: TTGGAGATGTCACTGCTAAAGGCGAATCTGTTGGGAACATTGCAGATCTGgtaaaaatca ... ccacctgaagCTCGGTACTGGTTTGAGTATCTTTATCTCAAAAAGGAATCCCTCACTGGTG
tattaacatgatttagcagctacactgactcctttttgttttattccacctgaagCTCGGTACTGGTTTGAGTATCTTTATCTCAAAAAGGAATCCCTCACTGGTGACTTCGTTTGCCTTCCTTTCCTGTGGATATCTCCTGAGTTCATATCAAG
ctcctttttgttttat CT-rich tract
tttttgttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caacagaaaggcttctgcttatatttgaatgttattgttctcatatattaacatgatttagcagctacactgactcctttttgttttattccacctgaagCTCGGTACTGGTTTGAGTATCTTTATCTCAAAAAGGAATCCCTCACTGGTGACTTCGTTTGCCTTCCTTTCCTGTGGATATCTCCTGAGTTCATATCAAG
caacaga
- - - - - gcttctg
- - - - - - - - - - - - ttgaatg
- - - - - - - - - - - - - - - - - - - - - - - - - -catgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcagcta